Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403695.1_202015-09-17] 37 sequences; 33,890,200 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 136 4e-27 seq22 93.3 5e-14 >seq23 Length=1220009 Score = 136 bits (150), Expect = 4e-27 Identities = 669/1059 (63%), Gaps = 51/1059 (5%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | |||||| | || ||||| || || || ||| ||||| | | |||| | Sbjct 335628 GTGCGTAGATAGTAGACACCAGTCTTCAGTCCAGCCTCCCAGCCGTAGAAGAGCATGGAC 335569 Query 78250 GACAGCTTGGCCAGAC-TCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | | || ||||||| | ||| ||| | |||| ||| || || |||||||||||||| Sbjct 335568 GTGATCT-GGCCAGAGGTGGGGCTCTGAAGAAAGAGGTTCAGTGATTGGGACTGGTCGAT 335510 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTT---TGCGGAATCTCCCAGAT 78365 ||| ||||||||| ||||||||||| | |||| ||||| |||||||| | Sbjct 335509 GTATTGGCCGCGGTCGCGTGCCATGTCGATCA---ACTTGCGCTGCGGGATCTCCCACAC 335453 Query 78366 GGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC--CAGCGCTTGTACGCTC---CCA 78420 ||||||||||| |||| || || || ||||| | || | ||| | | || ||| Sbjct 335452 GGTCCGGTAAAGCTCCTTTAGGTCATCTGGGATGCCGTCAATG-TTG-AGGATCGAACCA 335395 Query 78421 CCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCA---GCGATTGATCTTCTGAAGA 78477 | | ||||| || ||||| ||||| || | | | || || Sbjct 335394 TTGTAAGAGATGATTTCGTTGCGCATTTGCTCATTCCACAGGCCA-CGCGC-GATG-AGG 335338 Query 78478 TCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 ||| ||| |||| | ||| | || |||||||||| ||| ||||| | ||| Sbjct 335337 TCCATGACGAGGTACTTGTTCACCACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAT 335278 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 || || | ||| | || |||||| ||||||||| || | ||||| | ||| || ||| Sbjct 335277 ATATTCGAGGTGAAGGGTTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCG 335218 Query 78598 GTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTT 78657 || |||||||| | ||||| || || || || | || | | ||| || | || Sbjct 335217 GTTGGCATGGGGGACACCAGCAGTGAGTTGCGTATGCCTACCTGCATGACCTTCTCTTTG 335158 Query 78658 AGGCCGTCCCA---------AAATTCATTCG---CCGCGATCCCCCACATGTCCGGTTGA 78705 |||| | |||| | |||| |||| || |||||| || || Sbjct 335157 AGGCTGGCCCAGTCCCAGCGACCGCTGTTCGGCCGCGCGTTCTTCCACATATCGAACTGC 335098 Query 78706 AGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCG 78765 || || |||||| ||||| |||||||| |||||||| | |||||||||||| ||| Sbjct 335097 AGAATGCCCTCGCTTGCCGGGCTGCCCTTGAAGGTCTCGTACGGTCCCTCCTCCTTTGCG 335038 Query 78766 AGTTCGCAT----GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTT 78821 || || ||| ||||||| | || ||| ||| | | |||||||| Sbjct 335037 AGCTC-CATCGACGACTCGACC---GCGGCGAAGTAGATGGTCTCGAAGANNNNNNNNNN 334982 Query 78822 GAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAG 78881 ||| || | | | || ||| || || || Sbjct 334981 NNNNNNNNNNNNNNNNNNNNNNNNNNACGGCAGTCGCATGAGGATAAAGGTGTCAGCGAG 334922 Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT 78941 |||||| || || | | |||| || |||| |||||||||||| || || | |||| Sbjct 334921 GCCCTGTACACCAAGACCGATGGGACGGTTGCGCATGTTGCTGCGGCGCGCTGTCTCGAC 334862 Query 78942 CGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001 ||||| |||| || || || || ||||| ||||| ||||||| | ||||| | Sbjct 334861 TGGGTAGTAGTTGCGGTCAATAACACGGTTTAGGTTGCGCGTGATCTGCTTCGTCACGGC 334802 Query 79002 GT--ACAATTTGG----CGAAATCAAAATGATTTC--CTTTGATGAAAGTCGGTAGGCAC 79053 || | || ||| ||| || | |||| | | || ||| ||| || Sbjct 334801 GTAGAGAAGCTGGTGGTTGAACTCGCGCT--TTTCAACGTCGACGAAGCGCGGCAGCGCG 334744 Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 | || || |||||||| ||||||||||| ||||| | ||||| ||||| ||| Sbjct 334743 ATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTG 334684 Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 |||| || || ||||||| || || | |||||||||||| ||| ||| || || Sbjct 334683 CACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCA 334624 Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGA 79212 |||||||| ||| ||||| || ||||| | |||| Sbjct 334623 TCCTTGTACAGGATGAACGGCCCGCCCGTCTCGATCTGA 334585 Score = 118 bits (130), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 16/227 (7%) Strand=Plus/Minus Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGG 79743 ||||||||||| ||||| ||||||||||| ||||| |||||||||| || |||||| Sbjct 334113 GCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGG 334054 Query 79744 AAGCAGCTCGA---CATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 ||||| ||| ||| || || || || || |||||||||||||| || || ||| Sbjct 334053 AAGCA---CGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTAGCG 333997 Query 79801 TGCGTGAAGAA-CTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCG----GGAGGT 79855 || ||||| || | | | |||||||| ||||||||| |||| || ||| | Sbjct 333996 TGGGTGAAAAAGCCCATCG-ACATCAGATTGTACGTCTC----ACGCACGTTGTTGAGAT 333942 Query 79856 CGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGC 79902 | |||||||||||| | ||||| ||||| || | | ||| ||| Sbjct 333941 CTCTGCCGTGGATGCCAAGGGCGACACGCATAAACATCTGCTGAGGC 333895 Score = 113 bits (124), Expect = 5e-20 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161 ||||||| | | || ||||| ||||| | |||||||| ||| || ||| || Sbjct 333895 GCCTCAGCAGATGTTTATGCGTGTCGCCCTTGGCATCCACGGCAGAGATCTCAACAACGT 333954 Query 19162 CCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 || ||||| ||| | |||||| | || ||||| ||||| || || ||||| || Sbjct 333955 GCGTGAGACGTACAATCTGATGTCGATGGGCTTTTTCACCCACGCTACTCCAACCCTCTT 334014 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCT---GTTTCCTAGTGGCTATGAAGGA 19278 |||||| || || || ||||| ||| |||| | ||||| ||||| |||||| Sbjct 334015 CAACGCTGGCACCCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGA 334071 Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGC 19320 |||||||| || ||||||||||| ||||| ||||||||||| Sbjct 334072 CGACAGCATCGACGGCATCTACGATACGCTGAAGGAGTGCGC 334113 Score = 104 bits (114), Expect = 3e-17 Identities = 658/1056 (62%), Gaps = 47/1056 (4%) Strand=Plus/Plus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||| ||||||| ||| |||| ||| |||||||| || ||| ||||||||| Sbjct 334586 CAGATCGAGACGGGCGGGCCGTTCATCCTGTACAAGGATGCATGCAACAGCAAGTCAAAC 334645 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||||||||| | || ||||||||| || |||||||| |||||||| | ||| | Sbjct 334646 CAGAAGAACCTTGGGACGATCAAGTGCTCGAACCTGTGCACTGAAATTGTCGAGTACACG 334705 Query 19913 AAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTC--- 19969 |||||| ||||| ||||| || || || || ||| | |||||| |||||| Sbjct 334706 TCGCCGGAGGAGACGGCCGTATGCAACCTCGCCTCCATCGCGCTGCCGCGCTTCGTCGAC 334765 Query 19970 -----AAGGCCTCCTCCTTCGACTTTGCCAAATTGT--ACGAGGTGACCCGGGTCGTCAC 20022 || || | ||| || ||| || | ||| ||||| | |||| Sbjct 334766 GTTGAAAAGCG--CGAGTTCAACCA--CCAGCTTCTCTACGCCGTGACGAAGCAGATCAC 334821 Query 20023 GCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTC 20082 ||| || || || || || || || || |||| ||||| |||| | |||||| Sbjct 334822 GCGCAACCTAAACCGTGTTATTGACCGCAACTACTACCCAGTCGAGACAGCGCGCCGCAG 334881 Query 20083 GAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACG---TTTTCAT 20139 || |||||| |||| || |||| | || || |||||||| || ||| || || | Sbjct 334882 CAACATGCGCAACCGTCCCATCGGTCTTGGTGTACAGGGCCTCGCTGACACCTTTATCCT 334941 Query 20140 GATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGA 20199 |||| | || | | ||||||| Sbjct 334942 CATGC---GACTGCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCGA 334998 Query 20200 GGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTA 20259 | || | ||| ||| || || | ||| || ||||| || ||||| || ||||| Sbjct 334999 GACCATCTACTTCGCCGCGGTCGAGTCGTCGATGGAGCTCGCAAAGGAGGAGGGACCGTA 335058 Query 20260 CGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGG---- 20315 |||||| |||||||| || || |||||| || || ||| || |||||| Sbjct 335059 CGAGACCTTCAAGGGCAGCCCGGCAAGCGAGGGCATTCTGCAGTTCGATATGTGGAAGAA 335118 Query 20316 -GCGTCACTGAGAATGAGTT--TTGGA--GCGCC---CTCAAGGTTGAGATCAAGACCCA 20367 ||| | || | || | ||| | ||| ||||| | || ||| | || Sbjct 335119 CGCGCGGCCGAACAGCGGTCGCTGGGACTGGGCCAGCCTCAAAGAGAAGGTCATG---CA 335175 Query 20368 CG--GGCTT-CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGAT 20424 | ||| | |||||||| |||| || | |||||||| ||||| || ||| | ||||| Sbjct 335176 GGTAGGCATACGCAACTCACTGCTGGTGTCCCCCATGCCAACCGCGTCCACCTCGCAGAT 335235 Query 20425 CATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACT 20484 | || ||||||||| |||||| || | ||| | || || ||| | || ||| || Sbjct 335236 TCTCGGCAACAACGAGTGTTTCGAACCCTTCACCTCGAATATATACGTCCGCCGTGTGCT 335295 Query 20485 GGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATAT 20544 | ||| |||||| |||| |||||| |||| ||| ||| | | | | Sbjct 335296 GAGCGGCGAGTTCCCTGTGGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGCCT 335355 Query 20545 GTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGG---GAGCGTCCAGGCATT 20601 |||| |||| || ||||| || | || || | || | |||| Sbjct 335356 GTGGAATGAGCAAATGCGCAACGAAATCATCTCTTACAATGGTTCGATCCTCAA--CATT 335413 Query 20602 G--GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAG 20659 | | ||||| | |||| ||||| ||||| ||||||| ||||| ||||| ||| Sbjct 335414 GACGGCATCCCAGATGACCTAAAGGAGCTTTACCGGACCGTGTGGGAGATCCCGCAGCGC 335473 Query 20660 AGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAAT 20719 | | ||||||||||| ||| |||||| ||||||||||||||||| || || || Sbjct 335474 AAGTTGATCGACATGGCACGCGACCGCGGCCAATACATCGACCAGTCCCAATCACTGAAC 335533 Query 20720 GTCTTCATGGAGAATCCGAGC-CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCA 20778 |||| | ||| || | | ||||| || | | ||||||| | ||||||||| | Sbjct 335534 CTCTTTCTTCAGAGCCCCACCTCTGGC-CAGATCACGTCCATGCTCTTCTACGGCTGGGA 335592 Query 20779 CAAGGGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 || || ||||| || | |||||||| || || Sbjct 335593 GGCTGGACTGAAGACTGGTGTCTACTATCTACGCAC 335628 >seq22 Length=1195710 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || |||||||| || || || ||||| || | |||||||| || ||||| || Sbjct 943292 GTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 943233 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || |||||||| ||| ||| ||||||||| || || || ||||||||||| || Sbjct 943232 CTGATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACA 943177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524546307280