Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403695.1_202015-09-17] 37 sequences; 33,890,200 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq23 113 5e-20 >seq23 Length=1220009 Score = 113 bits (124), Expect = 5e-20 Identities = 299/451 (66%), Gaps = 7/451 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||||||||| ||||| ||| | || |||||||||||||| || | ||||| | Sbjct 335180 GGCATACGCAACTCACTGCTGGTGTCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTC 335239 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGC 55596 |||||||||||| ||||| || | ||| | || || ||| | ||||| || ||| Sbjct 335240 GGCAACAACGAGTGTTTCGAACCCTTCACCTCGAATATATACGTCCGCCGTGTGCTGAGC 335299 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || ||||| || | |||||| ||||||||| |||||| | | ||| Sbjct 335300 -GGCGAGTTCCCTGTGGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGCCTGTG 335358 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG-- 55714 ||| ||| || | || || | || || || ||| || | || Sbjct 335359 GAATGAGCAAATGCGCAACGAAATCATCTCTTACAATGGTTCGATCCTCAACATTGACGG 335418 Query 55715 -ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 || || || |||||| |||||||||| ||||||||||| || ||| | | Sbjct 335419 CATCCCAGATGACCTAAAGGAGCTTTACCGGACCGTGTGGGAGATCCCGCAGCGCAAGTT 335478 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 ||| |||||| || || || ||||||||||||||||| || |||||| |||| Sbjct 335479 GATCGACATGGCACGCGACCGCGGCCAATACATCGACCAGTCCCAATCACTGAACCTCTT 335538 Query 55834 CATGGAGA-ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 | ||| || | |||||| || | | || |||| ||| ||||| ||| || | Sbjct 335539 TCTTCAGAGCCCCACCTCTGGCC-AGATCACGTCCATGCTCTTCTACGGCTGGGAGGCTG 335597 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||| ||||| ||| | |||||||| || || Sbjct 335598 GACTGAAGACTGGTGTCTACTATCTACGCAC 335628 Score = 107 bits (118), Expect = 2e-18 Identities = 164/226 (73%), Gaps = 12/226 (5%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACACG-CGT 53236 ||||||| | | || ||||| |||||| | || |||||||| || || || ||| Sbjct 333895 GCCTCAGCAGATGTTTATGCGTGTCGCCCTTGGCATCCACGGCAGAGATCTCAACAACGT 333954 Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTT-ACGCACGCCACGCCAACCCT 53295 | |||||||||||| | | ||| | | | ||| || ||||| || |||||||| Sbjct 333955 G--CGTGAGACGTACAATCTGATGT-CGATGGGCTTTTTCACCCACGCTACTCCAACCCT 334011 Query 53296 GTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAA 53352 ||||||||||| || | || || ||| |||| |||||||||||||| ||| Sbjct 334012 CTTCAACGCTGGCACCCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAA 334068 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCC 53398 ||| ||| ||||||||||||||||| ||||| |||||||| ||| Sbjct 334069 GGACGACAGCATCGACGGCATCTACGATACGCTGAAGGAGTGCGCC 334114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215746912600