Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq27 100 6e-16 seq22 100 6e-16 seq23 84.2 5e-11 >seq27 Length=1026784 Score = 100 bits (110), Expect = 6e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||| | || | |||| | Sbjct 858840 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCA 858781 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | | | || ||| | ||||| ||| Sbjct 858780 CAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTAC 858721 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | | || |||| || |||||| | || ||||| || || ||||| |||||| Sbjct 858720 AACGCGACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 858661 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || || |||| Sbjct 858660 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCCGGCGTCATGA 858618 >seq22 Length=633148 Score = 100 bits (110), Expect = 6e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||| | || | |||| | Sbjct 480272 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCA 480213 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | | | || ||| | ||||| ||| Sbjct 480212 CAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTAC 480153 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | | || |||| || |||||| | || ||||| || || ||||| |||||| Sbjct 480152 AACGCGACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 480093 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || || |||| Sbjct 480092 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCCGGCGTCATGA 480050 >seq23 Length=759779 Score = 84.2 bits (92), Expect = 5e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||| |||||||||| | ||||||| || ||||||||||||||||||||||| Sbjct 226446 TCTAGCTCAGTTGGTAGAGCGCGTGGCTTTTAACCTCGTGGTCGTGGGTTCGAGCCCCAC 226505 Query 165775 G 165775 | Sbjct 226506 G 226506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820598104130