Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 >seq6 Length=495072 Score = 141 bits (156), Expect = 1e-28 Identities = 524/807 (65%), Gaps = 23/807 (3%) Strand=Plus/Minus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||||||||| ||||| || ||| || ||| | || | | | |||| Sbjct 357412 TAAACGGCCATCTCCATCTTGATGGGCGGGTGTGGCACGTAATCTATCACCTCCATGTCC 357353 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGG-G 145655 || | | |||| || | | ||| | |||| ||| ||||| |||| || | | Sbjct 357352 GTCGACTCGTAGTCCTCGAGGAACTCGCGCTCCCTCCGGAAGATGAGCGTGGGGAACGCG 357293 Query 145656 CCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCG 145714 ||| ||| | || ||||| ||| |||| || ||||||||| |||| || || | Sbjct 357292 TTAGGGACTC--GCTCGAGCTGCGCCTTGAGGGCATCGACGTGGTTGCGGTACACATGGG 357235 Query 145715 CGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGT 145774 |||| || ||| ||| | | || || ||| | ||| || | || | | | Sbjct 357234 CGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGCAAGCCTGTCGCCTTCGCCATGAGGA 357175 Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834 ||| || || | |||| ||| | ||||||||| || || || ||||| || | ||||| Sbjct 357174 TGGTGAGTAGCGCGTAGGAGGCGACGTTGAAGGGAACGCCGAGTCCCATATCGCACGAGC 357115 Query 145835 GCTGGTACAGCTGGCAGGAGAGCTCC-CCGCC-----CGCCACGTAGAACTG-GCACAGG 145887 ||||||||| | |||||| | |||| |||| ||| |||||||| ||| || Sbjct 357114 GCTGGTACACCATGCAGGACAACTCCTTCGCCTCTGAGTTCACATAGAACTGAGCA-AGT 357056 Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947 | |||||| |||||||| ||||| | |||| | ||||||||||||||| | || | Sbjct 357055 AAGTGGCACGGCGGCAGTGCCATCTCTTTCAGGGCGCGCGGGTTCCAGGCGGTAAAGAGG 356996 Query 145948 AGCCTCCTGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCAC 146006 || | || | || || |||||| ||| ||| | | | || ||||||||| Sbjct 356995 AGGCGCC-GATCGTCCGGGTTCAAACGGATTGTGTCTACGATCGCGCGGATCTGGTCCAC 356937 Query 146007 GCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTG 146066 |||| || || | || | | | |||| | || |||||||| | |||||| Sbjct 356936 CCCCTCGCCGTCATAGTTTGCGTCATAACCTCTGTACTCTGCACCGAAGTGGCGCCACTG 356877 Query 146067 GAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC---CAGCCCGGCCCGGGC 146123 ||| |||||||| || || |||||| ||| | | | | |||||| | | | Sbjct 356876 GAAGCCGTAGACAGGGCCGAGGTCC---ATCTCTTTATTCTCGGTCAGCCCACGGCTGTC 356820 Query 146124 GAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATT 146183 || || || || || |||||| ||||||| || | | |||| | | | ||| | Sbjct 356819 AAGAAACTCGCGCGAGCCGTTGCCGTCCCAAATATGAATGCCCTTATCCGCCAGCAGCTG 356760 Query 146184 GGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGAC 146243 | || ||| || | | |||||| |||||||| ||| || || | ||||||||| Sbjct 356759 CGCGTTCGTCTCGCCGCGCAGGAACCACAGCAGCTCCTCGCACACGCCGCGCCAGAAGAC 356700 Query 146244 CCTCTTGGTGGTCAGCAGGGGGA-AC--TGGCCCCGCAGGGAGTACTTGGCCTGGTCCCC 146300 | ||| || || || || || | || | | ||||||||| || ||| | || Sbjct 356699 GCGCTTTGTTGTAAGGAGCGGCAGACGGTTGTTGCGCAGGGAGAACCGCATCTGAGCTCC 356640 Query 146301 GAAGACGGACAGGGTGCCCACGCCCGT 146327 ||||| | | ||||||||| || || Sbjct 356639 GAAGAGGCTGATGGTGCCCACCCCAGT 356613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074948634040