Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq27 379 2e-100 seq22 379 2e-100 seq36 102 8e-17 >seq27 Length=1026784 Score = 379 bits (420), Expect = 2e-100 Identities = 611/862 (71%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || ||||| || ||| | ||| | ||||| || || || | ||| Sbjct 859536 GAGCCGCTGCAGCAGGAGAATCCGTTCCGCTACGTCCTCTTCCCGATCCAGTATCATGAC 859477 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | ||||| Sbjct 859476 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTC 859417 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 859416 GGCAACGACATGAAGGACTGGGTGGCGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 859358 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| ||| |||||||||||| |||||| || | |||| || Sbjct 859357 CGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAACCTCGCGCAGCGCTT 859298 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | || || || ||||| | |||||||| ||||| || || ||| | |||| Sbjct 859297 -TATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGG 859239 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | ||||| || | ||| ||| || | ||||||||| | || | | ||| Sbjct 859238 AGAACATTCACTCCGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAG 859180 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||| | || || || |||| || ||||||| |||||| |||| ||||||| ||| Sbjct 859179 GAGAAGTTGCGGCTGCTGCACGCGATTCAGACGATCCCGTGCATCAAGAAGAAGGCAGAG 859120 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| | || ||||| | |||| | | || ||| | ||||| ||| | || || Sbjct 859119 TGGGCTGTACGGTGGATTGGGAGCAGCGCG--AGCTTTCAG-GAGCGACTGATTGCGTTT 859063 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| |||||||||||||| ||| || | || ||||| ||||| Sbjct 859062 GCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAAG 859003 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || ||||| ||||| || ||||| |||||||||||||||||||| | ||||| || ||| Sbjct 859002 CGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTG 858943 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || ||| || ||| ||| ||| | ||| | | | | | || | Sbjct 858942 CACACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCA-CAAGCTACCCCGCGA 858884 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| ||||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 858883 GCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 858825 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||||||||| ||| | || | || | || |||| | || ||||||||||||| Sbjct 858824 CGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCG 858765 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | || ||| | ||||| || ||| | | | |||||||||||| || | | || Sbjct 858764 TGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCAT 858705 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 858704 TTGACTTCATGGAGATGATCTC 858683 >seq22 Length=633148 Score = 379 bits (420), Expect = 2e-100 Identities = 611/862 (71%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || ||||| || ||| | ||| | ||||| || || || | ||| Sbjct 480968 GAGCCGCTGCAGCAGGAGAATCCGTTCCGCTACGTCCTCTTCCCGATCCAGTATCATGAC 480909 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | ||||| Sbjct 480908 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTC 480849 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 480848 GGCAACGACATGAAGGACTGGGTGGCGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 480790 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| ||| |||||||||||| |||||| || | |||| || Sbjct 480789 CGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAACCTCGCACAGCGCTT 480730 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | || || || ||||| | |||||||| ||||| || || ||| | |||| Sbjct 480729 -TATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGG 480671 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | ||||| || | ||| ||| || | ||||||||| | || | | ||| Sbjct 480670 AGAACATTCACTCCGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAG 480612 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||| | || || || |||| || ||||||| |||||| |||| ||||||| ||| Sbjct 480611 GAGAAGTTGCGGCTGCTGCACGCGATTCAGACGATCCCGTGCATCAAGAAGAAGGCAGAG 480552 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| | || ||||| | |||| | | || ||| | ||||| ||| | || || Sbjct 480551 TGGGCTGTACGGTGGATTGGGAGCAGCGCG--AGCTTTCAG-GAGCGACTGATTGCGTTT 480495 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| |||||||||||||| ||| || | || ||||| ||||| Sbjct 480494 GCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAAG 480435 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || ||||| ||||| || ||||| |||||||||||||||||||| | ||||| || ||| Sbjct 480434 CGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTG 480375 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || ||| || ||| ||| ||| | ||| | | | | | || | Sbjct 480374 CACACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCA-CAAGCTACCCCGCGA 480316 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| ||||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 480315 GCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 480257 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||||||||| ||| | || | || | || |||| | || ||||||||||||| Sbjct 480256 CGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCG 480197 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | || ||| | ||||| || ||| | | | |||||||||||| || | | || Sbjct 480196 TGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCAT 480137 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 480136 TTGACTTCATGGAGATGATCTC 480115 >seq36 Length=2618838 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| || ||||| |||||||| || | ||||| || ||| Sbjct 1341394 GACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGAC 1341335 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||| ||||||||||||| ||| ||||| || | || ||| Sbjct 1341334 TACAACATCCAGAAGGAGTCCACGCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 1341281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217583499760