Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq27 111 3e-19 seq22 111 3e-19 >seq27 Length=1026784 Score = 111 bits (122), Expect = 3e-19 Identities = 284/419 (68%), Gaps = 15/419 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 858623 ACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGC 858682 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGG-CGCAGTTGTACACCTTGTCGTACCCCAG 157362 || ||||| ||||| | || ||||| | | ||| |||||| ||| || | || || Sbjct 858683 GAGATCATCTCCATGAAGTCAAATGGCTGCGTCGC-GTTGTAGTGCTTCTCCTCACCGAG 858741 Query 157363 CTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGA 157421 | | | ||| ||| | |||||||| |||| |||||||| || ||| || | | | | Sbjct 858742 CGAGATGAGC-AGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCA 858800 Query 157422 TACCGATGAGCGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCG 157480 | ||||| ||| || || ||||| | || | ||||| |||| ||| | | | || || Sbjct 858801 TGCCGATCAGCCGCACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCA 858859 Query 157481 TGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAG 157537 | | || || || | || | ||| || || ||| | | | ||| ||| ||||| Sbjct 858860 TCCACGATGATCTCCAGCACGCGCTCGCGGGGTAGCTTGTGCCTGATGTGCGAGTTGTAC 858919 Query 157538 ATGAGA-ACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCG 157594 | ||| | | |||| ||||| || || |||||||||| | |||||| ||| | Sbjct 858920 AACAGACATGCGAAGTCCGTG---TGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTG 858976 Query 157595 AACGACAAACCCTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 |||| || ||| | | ||||||||||||||| | | || |||||||| || Sbjct 858977 AACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCC 859035 >seq22 Length=633148 Score = 111 bits (122), Expect = 3e-19 Identities = 284/419 (68%), Gaps = 15/419 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 480055 ACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGC 480114 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGG-CGCAGTTGTACACCTTGTCGTACCCCAG 157362 || ||||| ||||| | || ||||| | | ||| |||||| ||| || | || || Sbjct 480115 GAGATCATCTCCATGAAGTCAAATGGCTGCGTCGC-GTTGTAGTGCTTCTCCTCACCGAG 480173 Query 157363 CTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGA 157421 | | | ||| ||| | |||||||| |||| |||||||| || ||| || | | | | Sbjct 480174 CGAGATGAGC-AGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCA 480232 Query 157422 TACCGATGAGCGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCG 157480 | ||||| ||| || || ||||| | || | ||||| |||| ||| | | | || || Sbjct 480233 TGCCGATCAGCCGCACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCA 480291 Query 157481 TGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAG 157537 | | || || || | || | ||| || || ||| | | | ||| ||| ||||| Sbjct 480292 TCCACGATGATCTCCAGCACGCGCTCGCGGGGTAGCTTGTGCCTGATGTGCGAGTTGTAC 480351 Query 157538 ATGAGA-ACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCG 157594 | ||| | | |||| ||||| || || |||||||||| | |||||| ||| | Sbjct 480352 AACAGACATGCGAAGTCCGTG---TGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTG 480408 Query 157595 AACGACAAACCCTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 |||| || ||| | | ||||||||||||||| | | || |||||||| || Sbjct 480409 AACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCC 480467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762946834368