Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 280 1e-70 seq27 206 2e-48 seq22 206 2e-48 >seq28 Length=1158465 Score = 280 bits (310), Expect = 1e-70 Identities = 585/865 (68%), Gaps = 10/865 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || || || || || ||| ||| ||| ||||||||||| ||||| ||| Sbjct 335080 GCGATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACGTGTACTCGACAATCTCG 335021 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || || ||||| |||||||| | || ||||||| || | || ||| Sbjct 335020 GTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACAC 334961 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||| || ||| ||||| ||| ||||||| ||||||||| | ||| || | Sbjct 334960 GCATCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAAC 334901 Query 23201 CACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || |||| |||| |||| | ||| || |||||| | ||| Sbjct 334900 CACACCTCCTGCGCCTGAAT-CGTCTTCACGCCGCGGCCCTCAGACTCGTAGCGCTCGTA 334842 Query 23260 CAA-CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 | ||| || || | | || || |||||| ||||| || || | || || Sbjct 334841 GAGTCGC-TCGAACGCCTCGCCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTCCA 334783 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| | || | || || |||| || | ||| || | ||| |||| Sbjct 334782 TCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACAGAG 334723 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || ||||| |||||| || |||||||| ||||| || ||| || | Sbjct 334722 CGTAGAAGAGGTCGCGAGCGCGCTGGTCATCTTTGCCCGTGTTACGCTTTAAAAGTAAGA 334663 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 | | || || || || ||||||||||| ||||| ||||| || || ||| | |||| Sbjct 334662 ACCCGAAGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGCGCTTAC 334603 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| ||||| || ||||| ||||| ||||||||| | || | |||||||| || || | Sbjct 334602 CGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCC 334543 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 |||| |||| || || || | ||| ||| || || | |||||| | Sbjct 334542 CGTTCGACGTACCATTGGTCCCGGCGATGTAACT---ACCAGCGGCACGGATGTTGTGCA 334486 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 |||| | || ||||| ||| ||| || |||| || || | ||||| ||||||| Sbjct 334485 CGTGCAGGCCGATGCCACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGCGTGTCGT 334426 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 ||||||| ||||||||||| || || | ||| |||| || ||||| |||||||| | Sbjct 334425 AGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATTTGCGGCT 334366 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 | || || | || ||| || ||||| ||||||| || ||| | || |||||||| | Sbjct 334365 TCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGCCCTTCGACATCA 334306 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | | ||| || || || || | ||| ||||| || |||| |||||| |||| Sbjct 334305 GGTCGTATGTCTCACGCACGTTTTCGAGATCCCGACCGTGGATGCCGAGGGCGACACGCA 334246 Query 23856 TCATCATGTATTGAGGTCTCTCGAC 23880 | | ||| | || || | ||| || Sbjct 334245 TGAACATCTGCTGCGGACGCTCCAC 334221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 369/578 (64%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 22310 ATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGG 22369 || ||||| || ||| ||| |||| ||| | || ||| || ||||| || || Sbjct 335797 ATCTCCCACACAGTCCGGTAAAGTTCCCTTAGGTCCTCCGGGATGCCGTCGATGCTGAGG 335738 Query 22370 ACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCG 22429 || || ||||||| | ||||| || ||| || ||||||| || ||| Sbjct 335737 ACAGAGCCGTTATAGGAAATGATTTCGTTCCGCATCTGCTCATTCCACAGCCCACGAGCG 335678 Query 22430 GTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGT 22489 | | || |||| || | |||||| || ||||||||||| || || ||||| Sbjct 335677 ATGAGGTCCATGACGAGGTACTTGTTCACGACCGGAAACTCGCCGCTCAGCACACGGCGG 335618 Query 22490 TGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTC 22549 ||||||||| || || || |||||||| | || ||||| || || ||||| | || Sbjct 335617 ACGTAAATGTTCGACGTAAAGGGTTCGAAGCACTCGTTGTTGCCGAGAATCTGTGAAGTG 335558 Query 22550 GAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA 22609 || ||||| ||||| || |||| |||| ||||| | | |||| || | || Sbjct 335557 GACGCGGTTGGCATGGGGGCCACTAGTAATGAGTTGCGTAGGCCGACCTGCATCACCTTC 335498 Query 22610 CTCTTGAGCATCGACCAGTCCCA-------CAGATCGGACGGCGTCACATTGTCCCACAT 22662 |||||| | | ||||||||| | | |||| || | | || | |||||| Sbjct 335497 TCCTTGAGGCTGGCCCAGTCCCAGCGGCCGCTGTTCGGTCG----CCCGTTCTTCCACAT 335442 Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722 || | |||| | ||| |||||||||||||| | | || || ||||| || | Sbjct 335441 GTCAAACTGCAGAATGCCCTCGCTCGCCGGGCTGCCCTTAAAGGTCTCATACGGGCCCTC 335382 Query 22723 TATCGCGGCAAGTTCGCAGC-TCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTT 22781 | || || || || | | ||| | ||| || | || || ||||||||||||| Sbjct 335381 CTCCTTCGCTAGCTC-CATCGATGACTCGACTGCGGCGAAGTAGATGGTCTCGAAGATTT 335323 Query 22782 TCTTGTTCAA-TTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCG 22840 | ||| || || ||| || || | |||||| |||||| | | ||| | | Sbjct 335322 CCACGTTTAACCTCTGCGCTTCCGCCG-AGACAAACGGCAGACGCATGAGGATGAAGGTG 335264 Query 22841 TCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 || || | ||||| || || | |||| || ||||| Sbjct 335263 TCAGCGAGGCCCTGCACCCCAAGGCCGACGGGGCGGTT 335226 >seq27 Length=1026784 Score = 206 bits (228), Expect = 2e-48 Identities = 451/670 (67%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 ||| |||||||| | || || || || || || || || ||| | || || || Sbjct 859281 GTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAG 859222 Query 57825 ATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTC 57884 | ||| ||| | || | || |||||| | | ||||| ||| ||||| | ||| | Sbjct 859221 ACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGTTGCGGCTGCTG 859162 Query 57885 AACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 ||||||| | || || |||| | ||| ||||||||||||||| | | ||||| Sbjct 859161 CACGCGATTCAGACGAT-CCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGAT 859103 Query 57944 AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 ||| | || | ||| ||| | || || ||||| ||||| || || || || Sbjct 859102 TGGGAGCAGCGCGAGCT--TTCAG-GAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCAT 859046 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 |||||||||||| || || | || ||| ||||||| || ||||||||||| || Sbjct 859045 CTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGG 858986 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 |||||||| ||||||||| | || ||||| ||||| || || || || || || || || Sbjct 858985 GCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATG 858926 Query 58124 CCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 || ||| |||| ||||| | || | | || || ||| | |||| || || Sbjct 858925 TCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGCGTGCTGGAGATCAT 858866 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 | || ||||| ||||| ||||| || ||| || || |||||| || | Sbjct 858865 CGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGAT 858806 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||| |||||| || |||||| || ||||||| ||||| || || ||| |||| | | Sbjct 858805 CGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCAT 858746 Query 58301 CGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGAT 58360 | || || ||| || |||||| ||| | || ||||| || ||| | |||| Sbjct 858745 CTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGACTTCATGGAGATGAT 858686 Query 58361 CTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGG 58420 |||||| |||||||||| ||||| ||||| || || || |||| || || || ||| Sbjct 858685 CTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCCGG 858626 Query 58421 CGTGATGAGC 58430 ||| |||||| Sbjct 858625 CGTCATGAGC 858616 >seq22 Length=633148 Score = 206 bits (228), Expect = 2e-48 Identities = 451/670 (67%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 ||| |||||||| | || || || || || || || || ||| | || || || Sbjct 480713 GTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAG 480654 Query 57825 ATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTC 57884 | ||| ||| | || | || |||||| | | ||||| ||| ||||| | ||| | Sbjct 480653 ACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGTTGCGGCTGCTG 480594 Query 57885 AACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 ||||||| | || || |||| | ||| ||||||||||||||| | | ||||| Sbjct 480593 CACGCGATTCAGACGAT-CCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGAT 480535 Query 57944 AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 ||| | || | ||| ||| | || || ||||| ||||| || || || || Sbjct 480534 TGGGAGCAGCGCGAGCT--TTCAG-GAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCAT 480478 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 |||||||||||| || || | || ||| ||||||| || ||||||||||| || Sbjct 480477 CTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGG 480418 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 |||||||| ||||||||| | || ||||| ||||| || || || || || || || || Sbjct 480417 GCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATG 480358 Query 58124 CCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 || ||| |||| ||||| | || | | || || ||| | |||| || || Sbjct 480357 TCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGCGTGCTGGAGATCAT 480298 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 | || ||||| ||||| ||||| || ||| || || |||||| || | Sbjct 480297 CGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGAT 480238 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||| |||||| || |||||| || ||||||| ||||| || || ||| |||| | | Sbjct 480237 CGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCAT 480178 Query 58301 CGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGAT 58360 | || || ||| || |||||| ||| | || ||||| || ||| | |||| Sbjct 480177 CTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGACTTCATGGAGATGAT 480118 Query 58361 CTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGG 58420 |||||| |||||||||| ||||| ||||| || || || |||| || || || ||| Sbjct 480117 CTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCCGG 480058 Query 58421 CGTGATGAGC 58430 ||| |||||| Sbjct 480057 CGTCATGAGC 480048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765001407920