Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq27 91.5 1e-13 seq22 91.5 1e-13 >seq27 Length=1026784 Score = 91.5 bits (100), Expect = 1e-13 Identities = 240/364 (66%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 52699 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCAC 52758 ||| | ||||| || || ||||| ||||||||| | || ||||| |||||||| ||||| Sbjct 858999 GGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCAC 858940 Query 52759 ACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAA 52818 || || || || ||| ||| || || ||| | | | | || | | || Sbjct 858939 ACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC 858880 Query 52819 ATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTA 52878 | || || || | || || || |||| || ||||| | ||||| | Sbjct 858879 GTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTG 858820 Query 52879 CCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCG 52938 || || || | ||||||||| || ||||| ||||||||||||| || ||| Sbjct 858819 CCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCG 858760 Query 52939 GACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCG 52998 ||| ||||| | || ||||||| || ||| |||| || ||| | || ||| Sbjct 858759 GACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGAC 858700 Query 52999 TTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGA-GACGTGTGGGCGA 53057 || ||| | | || ||||| ||||||| || ||||| ||||||| || | |||||||| Sbjct 858699 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGA 858641 Query 53058 GTAC 53061 |||| Sbjct 858640 GTAC 858637 >seq22 Length=633148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 240/364 (66%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 52699 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCAC 52758 ||| | ||||| || || ||||| ||||||||| | || ||||| |||||||| ||||| Sbjct 480431 GGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCAC 480372 Query 52759 ACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAA 52818 || || || || ||| ||| || || ||| | | | | || | | || Sbjct 480371 ACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC 480312 Query 52819 ATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTA 52878 | || || || | || || || |||| || ||||| | ||||| | Sbjct 480311 GTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTG 480252 Query 52879 CCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCG 52938 || || || | ||||||||| || ||||| ||||||||||||| || ||| Sbjct 480251 CCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCG 480192 Query 52939 GACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCG 52998 ||| ||||| | || ||||||| || ||| |||| || ||| | || ||| Sbjct 480191 GACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGAC 480132 Query 52999 TTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGA-GACGTGTGGGCGA 53057 || ||| | | || ||||| ||||||| || ||||| ||||||| || | |||||||| Sbjct 480131 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGA 480073 Query 53058 GTAC 53061 |||| Sbjct 480072 GTAC 480069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062443599200