Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 1e-15 seq22 98.7 1e-15 >seq27 Length=1026784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||||||||| || |||||| || || |||| || | |||||| | Sbjct 858918 ACAACAGACATGCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTGA 858977 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 |||| || || ||||| ||||||||||| || ||||| || | | | || || || || Sbjct 858978 ACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCG-CACAGAACGAGCCC 859036 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 ||||||||||| || || || || ||||| ||||| |||| ||| | | | || ||| Sbjct 859037 GAAAAGAAGATGCCCTCCACCGCGGCAAACGCAATCAGTCGCTCCTGAAAGCTCGCGCTG 859096 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 |||||| | |||||| || |||||||| || | || || ||||| Sbjct 859097 CTCCCAATCCACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGT 859149 >seq22 Length=633148 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||||||||| || |||||| || || |||| || | |||||| | Sbjct 480350 ACAACAGACATGCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTGA 480409 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 |||| || || ||||| ||||||||||| || ||||| || | | | || || || || Sbjct 480410 ACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCG-CACAGAACGAGCCC 480468 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 ||||||||||| || || || || ||||| ||||| |||| ||| | | | || ||| Sbjct 480469 GAAAAGAAGATGCCCTCCACCGCGGCAAACGCAATCAGTCGCTCCTGAAAGCTCGCGCTG 480528 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 |||||| | |||||| || |||||||| || | || || ||||| Sbjct 480529 CTCCCAATCCACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGT 480581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137094300760