Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq28 132 7e-26 seq27 125 1e-23 seq22 123 4e-23 >seq28 Length=1158465 Score = 132 bits (146), Expect = 7e-26 Identities = 249/357 (70%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || || || || ||||| |||||||||||||||||||| || || | || || Sbjct 334710 GACCTCTTCTACGCTCTGTGGGTCCCAGATTTGTTCATGAAGCGTGTGAAGGGCGAGGGG 334769 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| |||| || | | || || || ||| |||| ||||| | | Sbjct 334770 AAGTGGACGCTGATGGACCCCAACACATGCCCGGGCCTCAGCGACTGCTATGGCGAGGCG 334829 Query 97113 TTTGAGGCCAAGTACACG-GC-CTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGAT 97169 || ||| | | | ||| || ||||||| |||||||| |||| |||||| || | Sbjct 334830 TTCGAG--CGACTCTACGAGCGCTACGAGTCTGAGGGCCGCGGCGTGAAGACGATTC-AG 334886 Query 97170 GCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 || | || ||||| |||||| || | | ||| | ||||| || |||| ||| Sbjct 334887 GCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACAGGCGGGCCGTTCATC 334946 Query 97230 CTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 || ||||||||| |||| || |||| ||||| || | ||||| |||||| | Sbjct 334947 CTGTACAAGGAT-GCGTGTAACAGCAAGTCAAACCAGAAGAACCTCGGCACGATCAAGTG 335005 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 ||| || |||||||| || ||||| |||||| | || || || |||||||| || || Sbjct 335006 CTCAAACCTGTGCACCGAGATTGTCGAGTACACGTCGCCAGAGGAGACGGCGGTGTG 335062 >seq27 Length=1026784 Score = 125 bits (138), Expect = 1e-23 Identities = 572/895 (64%), Gaps = 48/895 (5%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| |||||||||||| ||| | |||||| || || || | | Sbjct 859501 CCTCTTCCCGATCCAGTATCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 859442 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| || ||| ||| || | || |||| | | | ||| Sbjct 859441 CTGGACGGTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGC---TGAA 859385 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | | |||||||| |||||| || || || Sbjct 859384 CGACGGGGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCAT 859325 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 |||| ||| || || | || || | | | || | | | || |||| | || Sbjct 859324 CGTCGTCGAGAACCTCGCGCAGCGCTT-TATGAGCGACGTAAAGGTGCCGGAGGCG-CGC 859267 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || || || ||||| | ||||| |||||| | ||||| || | |||||| ||| Sbjct 859266 GCGTTCTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTG 859207 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACAC 125350 | |||| |||||| | || | || | | || | || | |||| || | || Sbjct 859206 CTGGACACGTACAT-CACGGACAGCGAGGAGAAGTTGCGGCTGCTGCACGCGATTCAGAC 859148 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAG 125408 | | |||| || || ||||| | |||| | |||||||| | | | | || Sbjct 859147 GATCCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGCAGCGCGAG 859088 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 ||| || ||||| | || || ||||| || |||||||||||||||||||| Sbjct 859087 CTTTCAGGAGC-----GACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGC 859033 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||| || || | || ||||| |||||||| || || ||||| || |||||| ||| Sbjct 859032 TCGTTCTG-TGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAG 858974 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT---- 125583 |||||| | || || |||||||| ||||| ||| ||||| || ||| ||| Sbjct 858973 CAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAA 858914 Query 125584 TTCGCA--------ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAA 125635 ||||| || | || | | |||| || | | || || ||||| Sbjct 858913 CTCGCACATCAGGCACAAGCTACCCCGCGAGCGC-------GTGCTG--GAGATCATC-- 858865 Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695 || ||||| |||| || || | ||||| | ||| | || ||||| | Sbjct 858864 ----GT---GGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCG 858812 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 |||| |||||||||| || | ||| ||||||| ||||| ||||| || || || Sbjct 858811 GCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGACCGACT 858752 Query 125756 ACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 || | | | || ||| |||||||| | | | || ||||| |||||| Sbjct 858751 GCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGACTTCATGGA 858692 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 858691 GATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTAC 858637 >seq22 Length=633148 Score = 123 bits (136), Expect = 4e-23 Identities = 574/896 (64%), Gaps = 50/896 (6%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| |||||||||||| ||| | |||||| || || || | | Sbjct 480933 CCTCTTCCCGATCCAGTATCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 480874 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| || ||| ||| || | || |||| | | | ||| Sbjct 480873 CTGGACGGTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGC---TGAA 480817 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | | |||||||| |||||| || || || Sbjct 480816 CGACGGGGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCAT 480757 Query 125174 CGTCAACGACAATCTGTTGACA-CGATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCG 125231 |||| ||| || || ||| || || | | | || | | | || |||| | || Sbjct 480756 CGTCGTCGAGAACCTCGC-ACAGCGCTT-TATGAGCGACGTAAAGGTGCCGGAGGCG-CG 480700 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 || || || || ||||| | ||||| |||||| | ||||| || | |||||| || Sbjct 480699 CGCGTTCTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCT 480640 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACA 125349 | | |||| |||||| | || | || | | || | || | |||| || | | Sbjct 480639 GCTGGACACGTACAT-CACGGACAGCGAGGAGAAGTTGCGGCTGCTGCACGCGATTCAGA 480581 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAA 125407 || | |||| || || ||||| | |||| | |||||||| | | | | | Sbjct 480580 CGATCCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGCAGCGCGA 480521 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 | ||| || ||||| | || || ||||| || |||||||||||||||||||| Sbjct 480520 GCTTTCAGGAGC-----GACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGG 480466 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | ||| || || | || ||||| |||||||| || || ||||| || |||||| || Sbjct 480465 CTCGTTCTG-TGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCA 480407 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT--- 125583 | |||||| | || || |||||||| ||||| ||| ||||| || ||| ||| Sbjct 480406 GCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACA 480347 Query 125584 -TTCGCA--------ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCA 125634 ||||| || | || | | |||| || | | || || ||||| Sbjct 480346 ACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC-------GTGCTG--GAGATCATC- 480297 Query 125635 ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCA 125694 || ||||| |||| || || | ||||| | ||| | || ||||| Sbjct 480296 -----GT---GGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGC 480245 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC 125754 | |||| |||||||||| || | ||| ||||||| ||||| ||||| || || | Sbjct 480244 GGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGACCGAC 480185 Query 125755 TACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGA 125814 | || | | | || ||| |||||||| | | | || ||||| |||||| Sbjct 480184 TGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGACTTCATGG 480125 Query 125815 CCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 480124 AGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTAC 480069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056874926760