Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq28 268 2e-66 seq20 86.0 2e-11 >seq28 Length=1158465 Score = 268 bits (296), Expect = 2e-66 Identities = 1006/1546 (65%), Gaps = 64/1546 (4%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || || |||||||| ||||| |||||||| || | || ||||| | | |||| Sbjct 334218 ATTGTGGAGCGTCCGCAGCAGATGTTCATGCGTGTCGCCCTCGGCATCCACGGTCGGGAT 334277 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGC 363557 | || || | ||| ||||| | || || ||| ||| | ||||| ||||| Sbjct 334278 CTCGAAAACGTGCGTGAGACATACGACCTGATGTCGAAGGGCT----TCTTCACACACGC 334333 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | ||| || || || | || || || ||| || |||||||| | Sbjct 334334 CACTCCGACCCTCTTCAACGCAGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTTCTGGT 334393 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 ||||||||| |||||| || |||| ||||| || ||| | ||||| | || Sbjct 334394 GGCGTCGAAGGACGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGAT 334453 Query 363678 TTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGCACAGAACAGT 363735 ||| || || || || || || | || | ||||| | ||||| ||| Sbjct 334454 CAGTAAGGCGGCCGGTGGCATCGGCCTGCA-CG-TGCACAACATCCGTGCCGCTGGTAGT 334511 Query 363736 TACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| ||| || || ||| ||||| |||||||| || ||||| || || || | Sbjct 334512 TACATCGCCGGGACCAATGG-TACGTCGAACGGGCTGGTACCGATGCTGCGCGTCTTCAA 334570 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 ||| || || | ||||| ||||||||||| || |||||||| || || || || |||| Sbjct 334571 CAACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAGGGTGCCTTCGCCGTGTA 334630 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA---AACACGGG 363911 || ||||| || |||||| | || | ||| ||| || || |||||||| Sbjct 334631 CCTTGAGCCGTGGCACGCCGATGTCTTCGGGTT-CTTA--CTTTTAAAGCGTAACACGGG 334687 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 ||||| || ||| || || || || ||||| || || ||||| | || || || Sbjct 334688 CAAAGATGACCAGCGCGCTCGCGACCTCTTCTACGCTCTGTGGGTCCCAGATTTGTTCAT 334747 Query 363972 GAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 |||||| ||| ||| | ||| ||| | || | ||| || ||| || || || Sbjct 334748 GAAGCGTGTGAAGGGCGAGGGGAAGTGGACGCTGATGGACCCCAACACATGCCCGGGCCT 334807 Query 364032 TTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 ||| || ||||| | | || | ||||| ||| || || || ||||| Sbjct 334808 CAGCGACTGCTATGGCGAGGCGTTCGAGCGACTCTA--CGAGCGCTACGAGTCTGAGGGC 334865 Query 364090 AAGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGAT 364148 | ||| ||||| |||| || ||| || | |||||||||||| |||| |||||||| Sbjct 334866 CGCGG-CGTGAAGACGATTCAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGAT 334924 Query 364149 TGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCA 364208 |||||||| || | || ||||||| ||| |||| ||| ||||||| |||||| | Sbjct 334925 CGAGACAGGCGGGCCGTTCATCCTGTACAAGGATGCGTGTAACAGCAAGTCAAACCAGAA 334984 Query 364209 GCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCGC 364265 | |||| || || | ||| || || ||||| || ||||||||| | || ||||| | Sbjct 334985 GAACCTCGGCACGA-TCA--AGTGCTCAAACCTGTGCACCGAGATTGTCGAGTACACGTC 335041 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGA 364325 || || ||||| || || |||||||| ||||| |||||||| || || || | | Sbjct 335042 GCCAGAGGAGACGGCGGTGTGTAACCTCGCGTCCATCGCGCTGCCCCGCTTCGTCGACGT 335101 Query 364326 TG------GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAA 364379 || | || ||||||||| ||| || || || | || || |||| Sbjct 335102 TGAGAAGCGCGAGTTCAACCACCAGCTTCTCTACACTGTGACAAAGCAGATCACGCGCAA 335161 Query 364380 TCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAG---CGTTCTAA 364436 ||| || ||||| ||| || ||||| || | ||||| | | || || Sbjct 335162 TCTGAACCGTGTTATTGACCGCAACTATTACCCGGT---CGAAGCGGCGCGCCGCAGCAA 335218 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 ||||| | ||||| | || ||||| || ||||||||||||||| | | || || Sbjct 335219 CATGCGCAACCGCCCCGTCGGCCTTGGGGTGCAGGGCCTCGCTGACACCT---TCATCCT 335275 Query 364497 CAAG---ATGGCATTTGATTCGCCTGACGCTC-GTGTTCTAAATAAGGAGATCTTTGAAA 364552 || | || | |||| ||| | || || | | | | |||| ||| ||||| || | Sbjct 335276 CATGCGTCTGCCGTTTGTCTCGGCGGAAGCGCAGAGGT-TAAACGTGGAAATCTTCGAGA 335334 Query 364553 CAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTAC 364611 | || || || |||||| | || | | ||| || | || || |||| ||| Sbjct 335335 CCATCTACTTCGCCGCAGTCGAGT-CATCGATGGAGCTAGCGAAGGAGGAGGGCCCGTAT 335393 Query 364612 TCTACTTATGAGGG-GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGT 364670 || | | |||| ||| | || |||| | | |||||||| | ||||| Sbjct 335394 GAGACCTTTAAGGGCAGCCCGGCGAGCG-AGGGCATTCTGCAGTTTGACATGTGGAAGAA 335452 Query 364671 CACGCCATC------TGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCA 364724 | || | | | ||| ||| |||||| | || || || | | || Sbjct 335453 CGGGCGACCGAACAGCGGCCGCTGGGACTGGGCCAGCCTCAAGGAGAAGGTGATGCAGGT 335512 Query 364725 TGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCT 364784 || |||||||| | | || |||||||| || || || ||| ||||||| || Sbjct 335513 CGGCCTACGCAACTCATTACTAGTGGCCCCCATGCCAACCGCGTCCACTTCACAGATTCT 335572 Query 364785 CGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTC 364844 ||| |||||||||||||||||||| ||||| || |||| ||||| || || Sbjct 335573 CGGCAACAACGAGTGCTTCGAACCCTTTACGTCGAACATTTACGTCCGCCGTGTGCTGAG 335632 Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904 ||| || |||||||| || || |||||||| |||| ||| || || || |||||||| Sbjct 335633 CGGCGAGTTTCCGGTCGTGAACAAGTACCTCGTCATGGACCTCATCGCTCGTGGGCTGTG 335692 Query 364905 GGGTGA-CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGT 364949 | ||| ||| ||| |||| | ||||| || ||| || ||||| Sbjct 335693 GAATGAGCAG-ATGCGGAACGAAATCATTTCCTATAACGGCTCTGT 335737 >seq20 Length=712016 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 371127 TCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTCTGTTGGCGCGCGTGTA 371186 ||||||||||||| || | |||||| ||| || ||||| || || ||| ||||||| Sbjct 2137 TCCATCTCACCAACGCGCAAGCCACCACTGCGCGAGCGTCCCTCAGTAGGCTGGCGTGTA 2196 Query 371187 AGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAACTACCATGTGCTTGAGG 371246 || | ||| |||| | ||| ||||| |||||| ||||||||||||||| Sbjct 2197 AGCATGGAACGTGGACCGGTGGAGCGCGCATGCATCTTGTCTGTGACCATGTGCTTGAGG 2256 Query 371247 CGCTGATAATAA 371258 |||||||||||| Sbjct 2257 CGCTGATAATAA 2268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349408496282