Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq28 347 1e-90 seq27 168 6e-37 seq22 168 6e-37 seq36 86.0 6e-12 >seq28 Length=1158465 Score = 347 bits (384), Expect = 1e-90 Identities = 911/1359 (67%), Gaps = 51/1359 (4%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||||| ||||||||||| || |||||| || | || | ||| ||||| Sbjct 335660 GTACTTGTTCACGACCGGAAACTCGCCGCTCAGCACACGGCGGACGTAAATGTTCGACGT 335601 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 |||||||| || ||||||| ||||| || || || | || | ||||| |||||| Sbjct 335600 AAAGGGTTCGAAGCACTCGTTGTTGCCGAGAATCTGTGAAGTGGACGCGGTTGGCATGGG 335541 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||||| | |||||| ||||| |||||| || | | | | ||||| || | |||| Sbjct 335540 GGCCACTAGTAATGAGTTGCGTAGGCCGACCTGCATCACCTTCTCCTTGAGGCTGGCCCA 335481 Query 145231 ATCCCATAG--CGAAGT-CGGCCTCACGTCC---CACATGTCGTACTGCAAAATGCCCTC 145284 ||||| | || || ||| | | ||| | |||||||| |||||| ||||||||| Sbjct 335480 GTCCCAGCGGCCGCTGTTCGGTCGCCCGTTCTTCCACATGTCAAACTGCAGAATGCCCTC 335421 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT-TTGGCGAGCTCGCAAC 145343 ||| || |||||||| | ||||| || || | ||| | || || ||||| || | Sbjct 335420 GCTCGCCGGGCTGCCCTTAAAGGT-CTCATACGGGCCCTCCTCCTTCGCTAGCTC-CATC 335363 Query 145344 TC-GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCT 145402 | ||| | ||| |||| || || |||||| |||| | ||| | | | |||| Sbjct 335362 GATGACTCGACTGCGGCGAAGTAGATGGTCTCGAAGATTTCCACGTTTAACCTCTGCGCT 335303 Query 145403 TCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCC 145462 || | | |||||| |||| || | || | || ||||| ||||| | || Sbjct 335302 TCCGCCGAGACAAACGGCAGACGCATGAGGATGAAGGTGTCAGCGAGGCCCTGCACCCCA 335243 Query 145463 ACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTA 145522 | ||||| ||| || | ||||||||| | ||||| |||| || || || Sbjct 335242 AGGCCGACGGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGCTTCGACCGGGTAATAGTTG 335183 Query 145523 CGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA---TGTGCCGCAACTTT 145579 ||||| |||| |||| || ||| | |||||| | ||| | | || Sbjct 335182 CGGTCAATAACACGGTTCAGATTGCGCGTGATCTGCTTTGTCACAGTGTAGAGAAGCTGG 335123 Query 145580 TCAAAGTCAAAC-CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAA 145638 | || ||| || || || |||||| | || ||| | ||||| ||||| | Sbjct 335122 TG---GTTGAACTCGCGCTTC-TCAACGTCGACGAAGCGGGGCAGCGCGATGGACGCGAG 335067 Query 145639 ATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 ||||| || ||||||||||| |||| || |||| | || ||||||| ||||| || Sbjct 335066 GTTACACACCGCCGTCTCCTCTGGCGACG-TGTACTCGACAATCTCGGTGCACAGGTTTG 335008 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 || ||||| || || || || | ||| || || ||||| ||||| |||||||| | Sbjct 335007 AGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACACGCATCCTTGTACA 334948 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTG 145815 | ||| |||| ||||| ||||| | ||||| ||||| ||| |||| || ||||| Sbjct 334947 GGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAAC--CACACCTCCTG 334890 Query 145816 CGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAA 145875 ||| | | | || | | ||||||||| ||||| | |||||| ||| || Sbjct 334889 CGCCTGAATCGTCTTCACGCCGCGGCCCTCAGACTCGTAGCGCTCGTAGAGTCGCTCGAA 334830 Query 145876 CGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATAC 145935 ||| || ||||| ||| ||||| || || ||||||| |||||||| ||| Sbjct 334829 CGCCTCGCCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTCCATCAGCGTCCACTT 334770 Query 145936 GCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTC 145995 || | | | || || |||| ||| ||||||||||| |||||||| ||||| | | ||| Sbjct 334769 CCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTC 334710 Query 145996 GC--GCGCTTTGCAATCCTCAGCACCCATGTTTCGC-TTCAAATTAAGCACACTATAGAT 146052 || |||| || || || ||| |||| ||| || ||| |||| || | | ||| Sbjct 334709 GCGAGCGCGCTG--GTCATCTTTGCCCGTGTTACGCTTTAAAAGTAAGAACCCGA-AGAC 334653 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTG 146109 || ||||||||||| |||| || ||||||| ||| || || || || ||||||||| Sbjct 334652 ATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTG 334593 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 |||||||| || | ||||||| |||||||||| ||| || | | ||| | | || Sbjct 334592 GTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTT--CGAC 334535 Query 146170 G--CCGTTCGTAGAGTTTATTCTGGTGCC-GCGGGAGCGCACGCAATGAACATTCACGCC 146226 | || || || | || | || |||| | || | | || || | || ||| Sbjct 334534 GTACCATTGGTCCCGGCGATGTAACTACCAGCGGCA-CGGATGTTGTGCACGTGCAGGCC 334476 Query 146227 GAGACC----GCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGC 146282 || || |||||| |||| || |||| || || ||||| |||||||||| Sbjct 334475 GATGCCACCGGCCGCCTTACT----GATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 334420 Query 146283 CGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG 146340 |||| ||||| ||| ||||| | ||| | |||||||||||||| ||| |||| | |||| Sbjct 334419 CGTCGATGCTGTCGTCCTTCG-ACGCC-ACCAGAAAGCACGAGCTCATTTGCGGCTTCGG 334362 Query 146341 CGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA 146379 || || || ||| | ||||| | ||||| || || Sbjct 334361 GGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAA 334323 >seq27 Length=1026784 Score = 168 bits (186), Expect = 6e-37 Identities = 325/466 (70%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 46135 AGCACCGCGA-CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCttttt 46193 |||| ||||| ||||| ||||| || | || ||||| ||||||||| |||| || Sbjct 859098 AGCAGCGCGAGCTTTCAG-GAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTT 859040 Query 46194 ttCTGGCA-GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGA 46252 ||| ||| ||| || || | || | | || | ||| | ||||| || |||| Sbjct 859039 TTCGGGCTCGTTCTGT-GCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGA 858981 Query 46253 CGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCT 46312 |||| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| | Sbjct 858980 CGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGT 858921 Query 46313 ACTATAACACTCGCGTGCACG-ACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAG 46371 || ||| | | | | || | ||||||| | | ||| ||||||| || || | Sbjct 858920 TGTACAACTCGCACAT-CAGGCACAAGCTACCCCGCGAGCGCGTGCTGGAGATCATCGTG 858862 Query 46372 GAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC-CTGCTGGG 46430 || |||||| ||| ||| ||||| | | ||| ||||| | ||| ||| | || Sbjct 858861 GATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGG-TGCGGCTGATCGG 858803 Query 46431 CATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCA 46490 ||||||| | ||| ||| | ||||||||||| || ||||||||||||||| | Sbjct 858802 CATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTC 858743 Query 46491 GCTTCACCAGCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCT 46549 ||| || |||||| | ||||| ||| | |||||||| || ||| | | |||| Sbjct 858742 GCTCGGTGAGGAGAAGCACTACAACGCGACGC-AGCCATTTGACTTCATGGAGATGATCT 858684 Query 46550 CCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||| ||||||| || || || ||||| ||| || |||||||| Sbjct 858683 CGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 858638 >seq22 Length=633148 Score = 168 bits (186), Expect = 6e-37 Identities = 325/466 (70%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 46135 AGCACCGCGA-CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCttttt 46193 |||| ||||| ||||| ||||| || | || ||||| ||||||||| |||| || Sbjct 480530 AGCAGCGCGAGCTTTCAG-GAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTT 480472 Query 46194 ttCTGGCA-GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGA 46252 ||| ||| ||| || || | || | | || | ||| | ||||| || |||| Sbjct 480471 TTCGGGCTCGTTCTGT-GCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGA 480413 Query 46253 CGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCT 46312 |||| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| | Sbjct 480412 CGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGT 480353 Query 46313 ACTATAACACTCGCGTGCACG-ACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAG 46371 || ||| | | | | || | ||||||| | | ||| ||||||| || || | Sbjct 480352 TGTACAACTCGCACAT-CAGGCACAAGCTACCCCGCGAGCGCGTGCTGGAGATCATCGTG 480294 Query 46372 GAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC-CTGCTGGG 46430 || |||||| ||| ||| ||||| | | ||| ||||| | ||| ||| | || Sbjct 480293 GATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGG-TGCGGCTGATCGG 480235 Query 46431 CATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCA 46490 ||||||| | ||| ||| | ||||||||||| || ||||||||||||||| | Sbjct 480234 CATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTC 480175 Query 46491 GCTTCACCAGCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCT 46549 ||| || |||||| | ||||| ||| | |||||||| || ||| | | |||| Sbjct 480174 GCTCGGTGAGGAGAAGCACTACAACGCGACGC-AGCCATTTGACTTCATGGAGATGATCT 480116 Query 46550 CCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||| ||||||| || || || ||||| ||| || |||||||| Sbjct 480115 CGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 480070 >seq36 Length=2618838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | ||| | || |||||||| || |||||||| || Sbjct 1341281 GCCACCGCGCAGGCGCAGCACCAGATGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 1341340 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || ||||| ||||| ||||||||||| || |||| | ||||||||||| || Sbjct 1341341 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGG 1341397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011319059840