Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28 136 8e-27 seq22 114 3e-20 seq27 111 3e-19 >seq28 Length=1158465 Score = 136 bits (150), Expect = 8e-27 Identities = 391/594 (66%), Gaps = 12/594 (2%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||| ||||||||||||| ||||||||||| ||| ||||| || || Sbjct 916070 GACTTCGTCGACAAGGAGCTGATTCTTTTCTCCATCGCTGACTGCGAGCGCAGCATCCCA 916129 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 |||| | | || ||| ||||||| ||||||||||||||||| || |||||||| Sbjct 916130 AGCGCGATCGACGGCTTCAAGCCCGGCCAGCGTAAGATCCTCTTCTCCTGCTTCAAGCGC 916189 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 ||| |||| | | || ||||| | ||| || | || || || ||||| || | | Sbjct 916190 AACTTGGTAAACGCCATCAAGGTTGTGCAGCTTGCCGGCTACGTCTCCGAGCACTCCGCC 916249 Query 218698 TACCATCACGGTGAGCAG-AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 ||||| ||||| |||||| | || | | |||| || || ||||||||||||| ||| Sbjct 916250 TACCACCACGGCGAGCAGTCGCTTGTACAG-ACCATCGTCGGAATGGCACAGGACTTTGT 916308 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816 ||||| ||||| || |||||| | | || ||||||||| | ||||| || Sbjct 916309 CGGCAGCAACAATGTGCCGCTGCTGCGCAAGGATGGCCAGTTTGGTACGCGTCTGCACGG 916368 Query 218817 TGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTA-CAAAGTTGTCGCCCGTG-ACGCGC 218874 || ||||| ||| | | | | || ||||| | | | | | | || || || Sbjct 916369 CGGCAAGGACCATGCCGCAGGCCGCTACATCTTCACCCGACTCATGCAACATGCCCGGGC 916428 Query 218875 CAGGTGTTCAATCAGGCCGATGA---TGTGCTCCTTAAGTATCTTGAGGACGATGGTTCT 218931 || | || | | |||||| || |||| || |||| || ||||| || Sbjct 916429 CA--TCTTTCACCCGGCCGACGACTTTGTGGTC---GAGTACAGGGACGACGACGGCCTC 916483 Query 218932 TCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAAT 218991 ||| | |||||| | || | || | || ||| | |||| || || || | | | Sbjct 916484 TCGGTGGAGCCCTTCTATTACATACCGGTCATCCCGATGGTGCTGGTGAACGGCACGACT 916543 Query 218992 GGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTGAC 219051 || ||||| || |||||||| || ||| || || || || ||| || |||||| Sbjct 916544 GGCATCGGCACCGGGTTCAGCACGAGCATCCCCAACTATAACCCGCTGGAGATAATTGAC 916603 Query 219052 AACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCGTGGTAC 219105 ||| || |||| ||||| ||| |||||||| |||| ||||||||| Sbjct 916604 AACCTCGAGCGCCTCATGCGAGGCGAGGAGATGCAGAAGATGCGGCCGTGGTAC 916657 >seq22 Length=633148 Score = 114 bits (126), Expect = 3e-20 Identities = 553/859 (64%), Gaps = 34/859 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||| || || | || Sbjct 480088 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTC 480147 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | | || | ||||| ||||| ||||| | Sbjct 480148 GCGTTGTAGTGCTTCTCCTCACCGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATG 480207 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 |||||| |||||| || ||||||||||| |||| || || | || || |||||| Sbjct 480208 TACTGTGCCATCAACTCCGAGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATG 480267 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | ||| Sbjct 480268 AACTCGCGCTCGATGTTCACCGCATCCACGATGATCTCCAGCACGCGCTCGCGGGGTAGC 480327 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGAG-CTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| | | | || ||||| || | || || | || |||||| || |||| Sbjct 480328 TTGTGCCTGATGTGCGAGTTGTACAACAGACATGCGAAGTCCGT--GTGCAGGCCTTCGT 480385 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 | || ||||| ||||||| | || | ||| || ||||||| ||||| ||| | || Sbjct 480386 CTCGCGAGATGAGCTCGTTG--CTGAACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAG 480443 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 |||||| | || || || || || || || | | ||||| || | | |||| Sbjct 480444 CCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCTCCACCGCGGCAAACGCAAT 480503 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGAACTTCTGT---GCCCATGCTGCCTT 252032 || ||||| ||| || | |||| | | | | | || ||||| ||||||| Sbjct 480504 CAGTCGCTCCTGAAA--GCTCGCGCTGCTCCCA-ATCCACCGTACAGCCCACTCTGCCTT 480560 Query 252033 CTT-TCCAACCGCGGG---GATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 ||| | | | |||| | || ||| |||| | | | | ||| |||| Sbjct 480561 CTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGC-AGCCGCAACTTCTCCTCG---C 480616 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||| |||| || || ||||| | |||||| |||| || || ||| || | | Sbjct 480617 TGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCGGAGTGAATGTTCTCCATCA 480676 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 || |||| | ||||||| ||||| || | | || || | |||| | Sbjct 480677 TCAGCTGGAACCCATAGAACGCGCGCGCCTCCGGCACCTTTACGTCGCTCATAAAGCGCT 480736 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 ||| | |||||| | || ||||| || ||||| || |||||| | || | | ||||| Sbjct 480737 GTGCGAGGTTCTCGACGACGATGCCGTCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGA 480796 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| ||||| ||||||| ||| | ||| |||||| ||||| | | | ||| Sbjct 480797 TGAAGTGCCGCTCCCCGTCGTTCAGC--GCCAC-CCAGTCCTTCATGTC--GTTGCCGAG 480851 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACAT 252385 | | || ||||||||||||| | | || || ||||||| ||||| | | | Sbjct 480852 GTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGT 480910 Query 252386 CAGGGTACTTGATTGGGAA 252404 || | |||| ||| ||||| Sbjct 480911 CATGATACTGGATCGGGAA 480929 >seq27 Length=1026784 Score = 111 bits (122), Expect = 3e-19 Identities = 552/859 (64%), Gaps = 34/859 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||| || || | || Sbjct 858656 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTC 858715 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | | || | ||||| ||||| ||||| | Sbjct 858716 GCGTTGTAGTGCTTCTCCTCACCGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATG 858775 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 |||||| |||||| || ||||||||||| |||| || || | || || |||||| Sbjct 858776 TACTGTGCCATCAACTCCGAGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATG 858835 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | ||| Sbjct 858836 AACTCGCGCTCGATGTTCACCGCATCCACGATGATCTCCAGCACGCGCTCGCGGGGTAGC 858895 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGAG-CTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| | | | || ||||| || | || || | || |||||| || |||| Sbjct 858896 TTGTGCCTGATGTGCGAGTTGTACAACAGACATGCGAAGTCCGT--GTGCAGGCCTTCGT 858953 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 | || ||||| ||||||| | || | ||| || ||||||| ||||| ||| | || Sbjct 858954 CTCGCGAGATGAGCTCGTTG--CTGAACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAG 859011 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 |||||| | || || || || || || || | | ||||| || | | |||| Sbjct 859012 CCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCTCCACCGCGGCAAACGCAAT 859071 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGAACTTCTGT---GCCCATGCTGCCTT 252032 || ||||| ||| || | |||| | | | | | || ||||| ||||||| Sbjct 859072 CAGTCGCTCCTGAAA--GCTCGCGCTGCTCCCA-ATCCACCGTACAGCCCACTCTGCCTT 859128 Query 252033 CTT-TCCAACCGCGGG---GATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 ||| | | | |||| | || ||| |||| | | | | ||| |||| Sbjct 859129 CTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGC-AGCCGCAACTTCTCCTCG---C 859184 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||| |||| || || ||||| | |||||| |||| || || ||| || | | Sbjct 859185 TGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCGGAGTGAATGTTCTCCATCA 859244 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 || |||| | ||||||| ||||| || | | || || | |||| | Sbjct 859245 TCAGCTGGAACCCATAGAACGCGCGCGCCTCCGGCACCTTTACGTCGCTCATAAAGCGCT 859304 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 || | |||||| | || ||||| || ||||| || |||||| | || | | ||||| Sbjct 859305 GCGCGAGGTTCTCGACGACGATGCCGTCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGA 859364 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| ||||| ||||||| ||| | ||| |||||| ||||| | | | ||| Sbjct 859365 TGAAGTGCCGCTCCCCGTCGTTCAGC--GCCAC-CCAGTCCTTCATGTC--GTTGCCGAG 859419 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACAT 252385 | | || ||||||||||||| | | || || ||||||| ||||| | | | Sbjct 859420 GTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGT 859478 Query 252386 CAGGGTACTTGATTGGGAA 252404 || | |||| ||| ||||| Sbjct 859479 CATGATACTGGATCGGGAA 859497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833494541091