Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq22 178 2e-39 seq27 176 8e-39 seq28 127 4e-24 seq33 87.8 3e-12 seq21 87.8 3e-12 >seq22 Length=633148 Score = 178 bits (196), Expect = 2e-39 Identities = 559/843 (66%), Gaps = 36/843 (4%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||||||||| |||||||||||||| ||| |||||||||||| | |||||||| Sbjct 480050 TCATGACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 480109 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | ||||||||||||||| || | | ||| | ||||| | || Sbjct 480110 GCAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCAC 480169 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | ||| | ||||| |||||||||||||||||||| ||||| ||||||| Sbjct 480170 CGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGT 480229 Query 10114 TCATGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||| |||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 480230 TCATGCCGATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 480288 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGA- 10228 || ||| |||||| ||| | |||| || ||| ||||||| | || | ||| Sbjct 480289 GCATCC---ACGATGATCTCCAGCACGCGCTCGCGGGGTAGCTTGTGCCTGATGTGCGAG 480345 Query 10229 --ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 |||| || | | || | | ||| ||||| ||||| || ||||| ||||||| Sbjct 480346 TTGTACAACAGACATGCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTG 480405 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| || || || || ||||||||| | || |||||||| Sbjct 480406 CTGAACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAG 480465 Query 10347 CCGGAGAACAGAAGA--CCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGCGAAG 10400 || ||| |||||| |||||||| ||| || || | || ||||| ||| Sbjct 480466 CC--CGAAAAGAAGATGCCCTCCACCGCGGCAAAC----GCAATCAGTCGCTC-CTGAAA 480518 Query 10401 GAGCG-GTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGAT 10459 | || | || | || | |||||| |||||||||| | | ||||| Sbjct 480519 GCTCGCGCTGCTCCCAATCCACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGAT 480578 Query 10460 CGTCTCGATAGCCTCGAAGAGCTTGTTAC-GCTCGGTCTC-GTCCTCAATAAGAGCATCA 10517 ||||| || || | | ||| | || ||| || | |||| || | || Sbjct 480579 CGTCTGAATCGCGTGCAGCAGC-CGCAACTTCTC-CTCGCTGTCCGTGATGTACGTGTCC 480636 Query 10518 AGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAAC 10577 || |||| ||||| |||| ||| | | |||| | | |||| | | |||||| Sbjct 480637 AGCAGCACCGAGTACGTCTCGGAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAAC 480696 Query 10578 ATACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCA 10635 || ||| || || | || || ||| |||| | ||| | |||||||| | | Sbjct 480697 GCGCGCGCCTCCGGCACCTTTACGTCGCTC-ATAAAG-CGCTGTGCGAGGTTCTCGACGA 480754 Query 10636 CCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCAT 10695 | ||||| || ||||| || |||||| |||| | ||||||||||||||| ||||| | | Sbjct 480755 CGATGCCGTCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGT 480814 Query 10696 CGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCC 10755 ||||||| ||| |||||| || || | | ||| | || ||||||||| |||| Sbjct 480815 CGTTCAG--CGCCAC-CCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCC 480871 Query 10756 AGA 10758 ||| Sbjct 480872 AGA 480874 >seq27 Length=1026784 Score = 176 bits (194), Expect = 8e-39 Identities = 310/445 (70%), Gaps = 15/445 (3%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||||||||| |||||||||||||| ||| |||||||||||| | |||||||| Sbjct 858618 TCATGACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 858677 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | ||||||||||||||| || | | ||| | ||||| | || Sbjct 858678 GCAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCAC 858737 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | ||| | ||||| |||||||||||||||||||| ||||| ||||||| Sbjct 858738 CGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGT 858797 Query 10114 TCATGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||| |||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 858798 TCATGCCGATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 858856 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGA- 10228 || ||| |||||| ||| | |||| || ||| ||||||| | || | ||| Sbjct 858857 GCATCC---ACGATGATCTCCAGCACGCGCTCGCGGGGTAGCTTGTGCCTGATGTGCGAG 858913 Query 10229 --ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 |||| || | | || | | ||| ||||| ||||| || ||||| ||||||| Sbjct 858914 TTGTACAACAGACATGCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTG 858973 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| || || || || ||||||||| | || |||||||| Sbjct 858974 CTGAACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAG 859033 Query 10347 CCGGAGAACAGAAGA--CCCTCCAC 10369 || ||| |||||| |||||||| Sbjct 859034 CC--CGAAAAGAAGATGCCCTCCAC 859056 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| | || ||||| || ||||| || |||||| |||| | ||||||||||||| Sbjct 859310 AGGTTCTCGACGACGATGCCGTCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAG 859369 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742 || ||||| | |||||||| ||| |||||| || || | | ||| | || | Sbjct 859370 TGCCGCTCCCCGTCGTTCAG--CGCCAC-CCAGTCCTTCATGTCGTTGCCGAGGTCGATC 859426 Query 10743 TCCTCCACGGTCCAGA 10758 |||||||| ||||||| Sbjct 859427 TCCTCCACCGTCCAGA 859442 >seq28 Length=1158465 Score = 127 bits (140), Expect = 4e-24 Identities = 391/599 (65%), Gaps = 7/599 (1%) Strand=Plus/Minus Query 31700 ACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCC 31759 |||||||||||| || || | || ||||| ||||||||||||| || || || || Sbjct 335063 ACACACCGCCGTCTCCTCTGGCGACGTGTACTCGACAATCTCGGTGCACAGGTTTGAGCA 335004 Query 31760 CGTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCA 31818 | |||| |||||| || ||| | ||| ||| ||||| ||||||| || | Sbjct 335003 CTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACACGCA-TCCTTGTACAGGA 334945 Query 31819 CGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTT 31878 | | ||| ||| ||||||||||||| | || ||| ||| || || |||| | Sbjct 334944 TGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGCGCCT 334885 Query 31879 TGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCC 31937 | || ||| | | || ||||| ||||||||||| || || |||| || || Sbjct 334884 GAATCGTCTTCACGC-CGCGGCCCTCAGACTCGTAGCGCTCGTAGAGTCGCTCGAACGCC 334826 Query 31938 TTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 | |||| || ||| | || || || || |||||||| | |||| ||| | Sbjct 334825 TCGCCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTCCATCAGCGTCCACTTCCCC 334766 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 ||| ||| || ||||||||||||| || | ||||| ||||| || || | | Sbjct 334765 TCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTCGCGA 334706 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 ||||| ||| || | ||| |||||| | || | ||| | | || |||| | Sbjct 334705 GCGCGCTGGTCATCTTTGCCCGTGTTACGCTTTAAAAGTAAGAACCCGAAGACATCGGCG 334646 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||| |||||||||||||| | |||||||| | || ||||||| || Sbjct 334645 TGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTGGTCCACG 334586 Query 32175 TATGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTG 32234 || | || ||| | | || |||||| ||||| | || | ||| |||||| Sbjct 334585 TAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGACGTACCATTG 334526 Query 32235 GTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCGCC 32293 ||||| ||| | |||| | | || |||| | || ||||||||||||||| || Sbjct 334525 GTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGTGCACGTGCAGGCCGATGCCACC 334467 Score = 111 bits (122), Expect = 3e-19 Identities = 323/495 (65%), Gaps = 22/495 (4%) Strand=Plus/Minus Query 176025 ATGAGGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTA 176084 |||||||||| | ||||| | || ||| ||||| || || ||| | ||||| Sbjct 916620 ATGAGGCGCTCGAGGTTGTCAATTATCTCCAGCGGGTTATAGTTGGGGATGCTCGTGCTG 916561 Query 176085 AATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAG 176144 || || || || || || | || || |||||||| | | ||||||| || | || Sbjct 916560 AACCCGGTGCCGATGCCAGTCGTGCCGTTCACCAGCACCATCGGGATGACCGGTATGTAA 916501 Query 176145 TATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCC 176204 || || || | | | |||||| || || ||| | | || | ||||||||| Sbjct 916500 TAGAAGGGCTCCACCGAGAGGCCGTCGTCGTCCCTGTACTCGACCACAAAGTCGTCGGCC 916441 Query 176205 TTGTGGAAAATATCCCGGG--TGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACG 176262 ||| || || |||||| ||||| || || | |||||||| || | | | | Sbjct 916440 GGGTGAAAGATGGCCCGGGCATGTTGCATGA--GTCGGGTGAAGATGTAGCGGCCTGCGG 916383 Query 176263 CACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCC------GCGAGGAAGAAGCA 176316 || ||||||||| ||||| || || | ||| || || || ||| | || ||| Sbjct 916382 CATGGTCCTTGCCGCCGTGCAGACGCGTACCAAACTGGCCATCCTTGCGCAGCAGCGGCA 916323 Query 176317 AATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGA- 176375 |||| || | || || |||| || ||||||||||| |||| ||| | | Sbjct 916322 CATTGTTGCTG------CCGACAAAGTCCTGTGCCATTCCGACGATGGT---CTGTACAA 916272 Query 176376 --GACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGA 176433 ||| |||||||||||| ||| ||| || ||| ||| ||||||| |||| | | Sbjct 916271 GCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCGGAGACGTAGCCGGCAAGCTGCACAA 916212 Query 176434 CTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGG 176493 | ||||| | | ||| | ||||||||| || ||||| || ||||| ||||| || Sbjct 916211 CCTTGATGGCGTTTACCAAGTTGCGCTTGAAGCAGGAGAAGAGGATCTTACGCTGGCCGG 916152 Query 176494 GCTTCAGACCATCGA 176508 |||| | || |||| Sbjct 916151 GCTTGAAGCCGTCGA 916137 >seq33 Length=1421109 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 481412 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 481355 >seq21 Length=721524 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 411945 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 412002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619508409720