Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq27 286 7e-72 seq22 286 7e-72 seq28 248 2e-60 >seq27 Length=1026784 Score = 286 bits (316), Expect = 7e-72 Identities = 599/873 (69%), Gaps = 25/873 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||||||||| || ||||||| || | || || || |||||| | Sbjct 859492 GATCCAGTATCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGT 859433 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||||| ||||| | ||| |||| | | ||||| | | ||| || || Sbjct 859432 GGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAGCG 859373 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | ||| |||| || | || ||||||||||||| | ||||||||| ||| ||||| Sbjct 859372 GCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAA 859313 Query 42464 CCTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 ||| || || | | || |||| || || || ||||||||| ||||| || | Sbjct 859312 CCTCGCGCAGC-GCTTTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGT 859254 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||| | || |||||| | ||||| ||| |||| | ||||| ||||||||| Sbjct 859253 TCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTGCTGGACACGTACA 859194 Query 42583 TCCTGGATCCCGTCGAGC-GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || ||| || ||| || ||| ||| | | || || ||||||| || |||||| Sbjct 859193 TCACGGACAGCGAGGAGAAGTTGCGG-CTGCTGCACGCGATTCAGACGATCCCGTGCATC 859135 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 ||||||||||| || ||||| | ||||| | ||| || || | | ||| | ||| Sbjct 859134 AAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGCAGCG-CG-AGCTTTCAG-GAG 859078 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | ||| | || ||| |||| || |||||||||||||| |||||| | ||| | | Sbjct 859077 CGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTG 859018 Query 42762 TTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 859017 TTCTGGCTGAAGAAGC--GTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCT 858960 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC---TCGAGCCACCTCA 42876 | ||||| || ||||| | |||||| || || || ||| | ||| ||| ||| Sbjct 858959 CGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAACTCG---CACATCA 858903 Query 42877 GGCACAAGC--CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 ||||||||| || || ||||| || | || |||||| ||| || ||| | ||||| Sbjct 858902 GGCACAAGCTACCCCGC--GAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGA 858845 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | |||||| || | ||||||| ||| ||| ||||||||||| || | || Sbjct 858844 GCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGAT 858785 Query 42995 GTGCA-AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT-CTCAGCCGC 43052 | ||| |||||||| ||| ||| || |||| || || | | | ||| || | Sbjct 858784 G-GCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAG- 858727 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 | ||||||| || || || || ||||| ||||||| |||||| || |||||||||| Sbjct 858726 CACTACAACGCGACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 858667 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||||||| || | ||| |||||| Sbjct 858666 AACTTCTTCGAGAAGAAGGTGGGCGAGTACCAG 858634 >seq22 Length=633148 Score = 286 bits (316), Expect = 7e-72 Identities = 599/873 (69%), Gaps = 25/873 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||||||||| || ||||||| || | || || || |||||| | Sbjct 480924 GATCCAGTATCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGT 480865 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||||| ||||| | ||| |||| | | ||||| | | ||| || || Sbjct 480864 GGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAGCG 480805 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | ||| |||| || | || ||||||||||||| | ||||||||| ||| ||||| Sbjct 480804 GCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAA 480745 Query 42464 CCTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 ||| || || | | || |||| || || || ||||||||| ||||| || | Sbjct 480744 CCTCGCACAGC-GCTTTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGT 480686 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||| | || |||||| | ||||| ||| |||| | ||||| ||||||||| Sbjct 480685 TCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTGCTGGACACGTACA 480626 Query 42583 TCCTGGATCCCGTCGAGC-GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || ||| || ||| || ||| ||| | | || || ||||||| || |||||| Sbjct 480625 TCACGGACAGCGAGGAGAAGTTGCGG-CTGCTGCACGCGATTCAGACGATCCCGTGCATC 480567 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 ||||||||||| || ||||| | ||||| | ||| || || | | ||| | ||| Sbjct 480566 AAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGCAGCG-CG-AGCTTTCAG-GAG 480510 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | ||| | || ||| |||| || |||||||||||||| |||||| | ||| | | Sbjct 480509 CGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTG 480450 Query 42762 TTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 480449 TTCTGGCTGAAGAAGC--GTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCT 480392 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC---TCGAGCCACCTCA 42876 | ||||| || ||||| | |||||| || || || ||| | ||| ||| ||| Sbjct 480391 CGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAACTCG---CACATCA 480335 Query 42877 GGCACAAGC--CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 ||||||||| || || ||||| || | || |||||| ||| || ||| | ||||| Sbjct 480334 GGCACAAGCTACCCCGC--GAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGA 480277 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | |||||| || | ||||||| ||| ||| ||||||||||| || | || Sbjct 480276 GCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGAT 480217 Query 42995 GTGCA-AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT-CTCAGCCGC 43052 | ||| |||||||| ||| ||| || |||| || || | | | ||| || | Sbjct 480216 G-GCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAG- 480159 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 | ||||||| || || || || ||||| ||||||| |||||| || |||||||||| Sbjct 480158 CACTACAACGCGACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 480099 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||||||| || | ||| |||||| Sbjct 480098 AACTTCTTCGAGAAGAAGGTGGGCGAGTACCAG 480066 >seq28 Length=1158465 Score = 248 bits (274), Expect = 2e-60 Identities = 1024/1593 (64%), Gaps = 53/1593 (3%) Strand=Plus/Minus Query 243868 CAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGT 243927 |||||||||||| || || || |||||| | | | | | || || |||||| Sbjct 335876 CAGAAAGAGGTTCAGCGATTGCGACTGGTCAATGTATTGGCCGCGGTCACGAGCCATGTC 335817 Query 243928 GATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGG 243987 ||| || | ||| | ||||| || | ||| ||| | | | |||| ||| || Sbjct 335816 GATCAGCTTGCGCTGCGGAATCTCCCACACAGTCCGGTAAAGTTCCCTTAGGTCCTCCGG 335757 Query 243988 GAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 || || |||||| | | || ||||| || | | |||| | | | ||||| | || Sbjct 335756 GATGCCGTCGATGCTGAGGACAGAGCCGTTATAGGAAATGATTTCGTTCCGCATCTGCTC 335697 Query 244048 GTTCCACAGGCC-CAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106 |||||||| || | |||| | || || ||| |||| | ||||||| ||| |||||| Sbjct 335696 ATTCCACAGCCCACGAGCGATG-AGGTCCATGACGAGGTACTTGTTCACGACCGGAAACT 335638 Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGT 244166 | || |||||| ||||| ||| | ||| | | || |||| || ||| ||| Sbjct 335637 CGCCGCTCAGCACACGGCGGACGTAAATGTTCGACGTAAAGGGTTCGAAGCACTCGTTGT 335578 Query 244167 TGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCA 244226 |||| || ||||| | ||| ||| || |||||||| | ||| || | ||| | | Sbjct 335577 TGCCGAGAATCTGTGAAGTGGACGCGGTTGGCATGGGGGCCACTAGTAATGAGTTGCGTA 335518 Query 244227 CGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGA--G 244281 |||| | || || | || |||| | ||||||||| ||| | | Sbjct 335517 GGCCGACC---TGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGGCCGCTGTTCG 335461 Query 244282 GTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCC 244341 ||| | |||| |||||||||||||||||| | |||| ||| | |||||||| Sbjct 335460 GTCGCC-CGTTCTT----CCACATGTCAAACTGCAGAATGCCCTCGCTCGCCGGGCTGCC 335406 Query 244342 CTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TCGAGGGCGG 244400 || ||||| || || || || || || |||| || | | |||| |||| Sbjct 335405 CTTAAAGGTCTCATACGGGCCCTCCTCCTTCGCTAGCTC-CATCGATGACTCGACTGCGG 335347 Query 244401 CGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC--AGGTGAA 244458 || ||||||||||||||||||| | ||| | | | | ||| |||| || || Sbjct 335346 CGAAGTAGATGGTCTCGAAGATTTCCACGTTTAAC-CTCTGCGCTT-CCGCCGAGACAAA 335289 Query 244459 GGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCT 244518 || | | ||| | |||||| ||| || || |||||||| || | ||||| ||| | Sbjct 335288 CGGCAGACGCATGAGGATGAAGGTGTCAGCGAGGCCCTGCACCCCAAGGCCGACGGGGCG 335229 Query 244519 GTGTCGCTTGTTGGAGCG---CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 || ||| ||||| ||| | |||||| || |||||| |||||| ||| || || Sbjct 335228 GTTGCGCATGTTGCTGCGGCGCGCCGCTTCG---ACCGGGTAATAGTTGCGGTCAATAAC 335172 Query 244576 CTTGTTGAGGTTGCGGGTGATCATGCG--GACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633 ||| || ||||| |||||| ||| | | || | || ||||| || | || Sbjct 335171 ACGGTTCAGATTGCGCGTGATC-TGCTTTGTCACAGT-GTAGAGAAGCTGGTGGTTGAAC 335114 Query 244634 TCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGG 244693 ||| | | ||| || | || || | || |||| | || ||| Sbjct 335113 TCGC---GCTTCTCAACGTCG---------ACGAAGCGGGGCAGCGCGATGGACGCGAGG 335066 Query 244694 TTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTG 244753 || || || ||| |||||| | ||||||| ||||||||||||||| ||||| | Sbjct 335065 TTACACACCGCCGTCTCCTCTGGCGACGTGTACTCGACAATCTCGGTGCACAGGTTTGAG 335006 Query 244754 CACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGC 244813 |||||||| ||||| |||| || || || |||||| ||| || || |||||||| || Sbjct 335005 CACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACACGCATCCTTGTACAGG 334946 Query 244814 ATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCC 244873 ||||| ||||| || ||||||| ||| | | |||| | ||| | ||| ||| Sbjct 334945 ATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGCGCC 334886 Query 244874 TTGACCGTCCTGCGAGCC-TTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 | | ||| || | ||| |||||| | ||||||||| ||| || ||||||| | Sbjct 334885 TGAATCGT-CTTCACGCCGCGGCCCTCAGACTCGTAGCGCTCGTAGAGTCGCTCGAACGC 334827 Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCC 244992 ||| || ||| ||||| ||||| | ||| ||| || |||||| || Sbjct 334826 CTCGCCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTCCATCAGCGTCCACTTCCC 334767 Query 244993 GCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCT 245052 || |||| || | || |||||| | || |||| ||| || || | ||||||||| | Sbjct 334766 CTCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTCGCG 334707 Query 245053 GGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGAC 245112 | | ||| || || ||| ||||| | | | || || | ||||| ||| | Sbjct 334706 AGCGCGCTGGTCATCTTTGCCCGTGTTACGCTTTAAAAGTAAGAACCCGAAGACATCGGC 334647 Query 245113 GTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 |||||| ||||| | ||| || |||| ||| || ||||| ||| |||||||||| Sbjct 334646 GTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTGGTCCA- 334588 Query 245173 CATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | | || ||| |||||||| |||||| | || || | ||||| || | Sbjct 334587 ---CGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGACGTAC 334531 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288 | ||||| || |||||| || | | | || |||| | | || ||| | | Sbjct 334530 CATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGTGCACGTGCAGGCCGATGC 334471 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 | ||||| ||| ||| | ||| || ||| | ||||| ||||| || |||| Sbjct 334470 CACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGC 334411 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 |||| |||| | ||||||||| ||| || || ||||| ||| ||| | || Sbjct 334410 TGTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCTGCGT 334351 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 |||| || || || ||||||| || ||| ||| Sbjct 334350 TGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGC 334318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336237135760