Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq28 91.5 1e-13 seq36 84.2 2e-11 >seq28 Length=1158465 Score = 91.5 bits (100), Expect = 1e-13 Identities = 249/378 (66%), Gaps = 5/378 (1%) Strand=Plus/Minus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 || || ||||| |||||||| || ||||||| |||||| || | || || || | | Sbjct 334756 ACACGCTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTCGCGAGCGCGCTGG 334697 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || |||| |||| ||||||||| || || | | | ||||||||||||||| Sbjct 334696 TCATCTTTGCCCGTGTTACGCTTTAAAAGTAAGAACCCGAAGACATCGGCGTGCCACGGC 334637 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACA 155081 || | || ||||| | || || ||||| || || || || ||||||| || | Sbjct 334636 TCAAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCG 334577 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGT 155141 || ||| | ||||||| || ||| ||| ||| | | ||| || ||||| || Sbjct 334576 GTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGACGTACCATTGGTCCCGGCG 334517 Query 155142 ATCGCGCTGCC-GCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTT 155200 || || || ||| ||||| || || || | | ||| | || ||| | || Sbjct 334516 ATGTAACTACCAGCG-GCACGGATGTTGTGCACGTGCAGGCCGATGCCACCGGCCGCCTT 334458 Query 155201 AGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAA 155260 | || ||||| ||| || || ||||| || || | ||||||||| || ||| | Sbjct 334457 ACTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGA 334398 Query 155261 CGTCAACAAGAAACACGA 155278 || || || || ||||| Sbjct 334397 CGCCACCAGAAAGCACGA 334380 >seq36 Length=2618838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| ||||| | ||| || || || || |||||||| || || Sbjct 1341282 CCACCGCGCAGGCGCAGCACCAGATGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1341341 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGG 64332 | ||||| | || || ||||||||||||||| | || || ||||||||||| || Sbjct 1341342 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGG 1341397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643232364440