Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq28 248 9e-61 >seq28 Length=1158465 Score = 248 bits (274), Expect = 9e-61 Identities = 511/751 (68%), Gaps = 8/751 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| |||||||| |||||||| || |||||| ||| || ||| ||||| || ||| Sbjct 334332 GCCACTCCGACCCTCTTCAACGCAGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTTCTG 334391 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| |||| |||| ||| || | ||||| || ||||| ||||| Sbjct 334392 GTGGCGTCGAAGGACGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTG 334451 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || ||||| | || ||| || | |||||| ||| Sbjct 334452 ATCAGTAAGGCGGCCGGTGGCATCGGCCTGCACGTGCACAACATCCGTGCCGCTGGTAGT 334511 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| |||||||| || || ||||| || || || ||||| || ||||||||| Sbjct 334512 TACATCGCCGGGACCAATGGTACGTCGAACGGGCTGGTACCGATGCTGCGCGTCTTCAAC 334571 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||||||||||||||| || | | | |||||| | ||||| || || Sbjct 334572 AACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAGGGTGCCTTCGCCGTGTAC 334631 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAA-AGAACCAC-GGCA 94249 || ||||| |||||||| || || | ||| | || | || | | ||| |||| Sbjct 334632 CTTGAGCCGTGGCACGCCGATGTCTTCGGGTTCTT--ACTTTTAAAGCGTAACACGGGCA 334689 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | ||| || | || | ||||||||||||||||| ||||| ||||| | || |||| Sbjct 334690 AAGATGACCAGCGCGCTCGCGACCTCTTCTACGCTCTGTGGGTCCCAGATTTGTTCATGA 334749 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || || || | |||| || | ||||| ||| || || || Sbjct 334750 AGCGTGTGAAGGGCGAGGGGAAGTGGACGCTGATGGACCCCAACACATGCCCGGGCCTCA 334809 Query 94370 CCGACGTTTGTGG-ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 |||| | ||| ||||| ||| | || | || ||||| || ||||| Sbjct 334810 GCGACTGCTATGGCGAGGCGTTCGAGCGAC-TCTACGAGCGCTACGAGTCTGAGGGCCGC 334868 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | |||| || | || | || ||||| | ||| |||| ||| | ||| Sbjct 334869 GGCGTGAAGACGATTCAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAG 334928 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAGCA 94547 || || ||| | |||| ||| |||||| | ||| ||| |||||| |||||| || | Sbjct 334929 ACAGGCGGGCCGTTCATCCTGTACAAGGATGCGTGT-AACAGCAAGTCAAACCAGAAGAA 334987 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| ||||||| |||| || ||||||||||||||||||||||| || || || || Sbjct 334988 CCTCGGCACGATCAAGTGCTCAAACCTGTGCACCGAGATTGTCGAGTACACGTCGCCAGA 335047 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 |||| || ||||||||||| | |||||| Sbjct 335048 GGAGACGGCGGTGTGTAACCTCGCGTCCATC 335078 Score = 131 bits (144), Expect = 2e-25 Identities = 197/278 (71%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 95098 CTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTC 95157 || |||||||||||||| || || ||||| | ||||| || ||||||||||||| ||| Sbjct 335532 CTAGTGGCCCCCATGCCAACCGCGTCCACTTCACAGATTCTCGGCAACAACGAGTGCTTC 335591 Query 95158 GAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATC 95217 |||||||| || || ||| | ||| | | || ||||| ||| || || || ||| | Sbjct 335592 GAACCCTTTACGTCGAACATTTACGTCCGCCGTGTGCTGAGCGGCGAGTTTCCGGTCGTG 335651 Query 95218 AACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAAC 95277 |||||| ||||| | |||||| | ||| || ||||| ||| || | |||| Sbjct 335652 AACAAGTACCTCGTCATGGACCTCATCGCTCGTGGGCTGTGGAATGAGCAGATGCGGAAC 335711 Query 95278 CAACTGCTACGCGCCAACGGCTCCGTCCAGAACATC--CCGCAAATACCGGAGGACATCA 95335 || | | | |||||||| |||| | |||| | || || ||||||||| | | Sbjct 335712 GAAATCATTTCCTATAACGGCTCTGTCCTCAGCATCGACGGC--ATCCCGGAGGACCTAA 335769 Query 95336 AGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || || ||| ||| ||||||||||| ||||||||| Sbjct 335770 GGGAACTTTACCGGACTGTGTGGGAGATTCCGCAGCGC 335807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721647805960