Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq28 336 2e-87 seq27 156 4e-33 seq22 156 4e-33 >seq28 Length=1158465 Score = 336 bits (372), Expect = 2e-87 Identities = 610/872 (70%), Gaps = 33/872 (4%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 || || ||||| || ||||| || |||||||| || |||| || |||||| || ||||| Sbjct 335080 GCGATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACG-TGTACTCGACAATCTC 335022 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 || ||| ||||| ||| || || ||| | || | ||| || |||| || || Sbjct 335021 GGTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACA 334962 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 ||| || ||| | || ||| |||| ||||| ||||||| |||| || | ||| ||| Sbjct 334961 CGCATCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAA 334902 Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 || || |||||||| | | | || | ||||||||| |||||| ||||| Sbjct 334901 CCA---CACCTCCTGCGCCTGAATCGTCTTCACGCCGCGGCCCTCAGACTCGTAGCGCTC 334845 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGATGCGGAC 153891 ||| |||||||| ||| | ||||| ||||||||| |||||| || || || || || | Sbjct 334844 GTAGAGTCGCTCGAACGCCTCGCCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTC 334785 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 |||||||| |||| | | ||| | || || || |||||||| ||| || ||||| | Sbjct 334784 -CATCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACA 334726 Query 153952 GCGCGTACATGAGGTCGCG--CGCCTTGCAATCCTCCGCGCCCATGTTGCG-TTTCAGAT 154008 | ||||| | ||||||||| ||| || || || |||| |||| || ||| | | Sbjct 334725 GAGCGTAGAAGAGGTCGCGAGCGCGCTGG--TCATCTTTGCCCGTGTTACGCTTTAAAAG 334668 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 | || || | | ||| ||||||||||| || |||| ||| ||||| | |||||| || | Sbjct 334667 TAAGAACCCGA-AGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGC 334609 Query 154069 GCTTTCCGCC---CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 |||| ||||| ||| || |||| ||| | | |||||||||||||||| ||| ||| Sbjct 334608 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTA 334549 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGAT 154185 |||| ||| | | || || |||||| ||| | || || ||| || | | | Sbjct 334548 CCAGCCCGTTCGACGTACCATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGT 334489 Query 154186 GCACGTTAACGCCAATGCC----GCCGCCGTACTTTGAT-ATGGCAGCGCAGTCGCCCAG 154240 |||||| | ||| ||||| |||||| |||| ||| | |||| || || ||| Sbjct 334488 GCACGTGCAGGCCGATGCCACCGGCCGCCTTACT--GATCACGGCA---CACTCCTTCAG 334434 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCG-GACGCCGAGCAAGAAACACGAACACA 154299 ||| |||||||||||||||||| ||||| |||||| | || || ||||| | || Sbjct 334433 CGTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCC-ACCAGAAAGCACGAGCTCA 334375 Query 154300 TTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACA-GTTTT 154358 ||||||| | | || || || |||||||| ||| | ||||| || || | | | Sbjct 334374 TTTGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGCCCT 334315 Query 154359 TGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGC 154418 | | ||||| | ||| || || ||| ||||| ||| ||||| |||||||| Sbjct 334314 TCGA-CATCAGGTCGTATGTCTCACGCACGTTTTCGAGATCCCGACCGTGGATGCCGAGG 334256 Query 154419 GCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 ||||| ||||||| ||| ||||||||||| || Sbjct 334255 GCGACACGCATGAACATCTGCTGCGGACGCTC 334224 >seq27 Length=1026784 Score = 156 bits (172), Expect = 4e-33 Identities = 256/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 52476 GGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCAC 52535 ||| | ||||| || |||||||||||||||||| | || ||||| |||||||| |||||| Sbjct 858999 GGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCAC 858940 Query 52536 ACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CAC 52594 |||||||| || || || | ||||| ||| | | | | || | || | | Sbjct 858939 ACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC 858880 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 | | ||| || || ||| |||||| ||||| ||||| | | |||||| Sbjct 858879 GTGCTGGAG-ATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCT 858821 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 |||||| |||| | ||||||||| || ||| ||| ||||||||||||| ||||| Sbjct 858820 GCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGC 858761 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTG 52773 ||| || ||| | | |||||| || ||| ||| |||||| ||| | || |||| Sbjct 858760 GGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGC-AGCCATTTG 858702 Query 52774 AGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCG 52833 | || ||| | | || ||||| |||||||||| ||||| ||||||||| || |||| Sbjct 858701 ACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCG 858642 Query 52834 AGTA 52837 |||| Sbjct 858641 AGTA 858638 >seq22 Length=633148 Score = 156 bits (172), Expect = 4e-33 Identities = 256/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 52476 GGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCAC 52535 ||| | ||||| || |||||||||||||||||| | || ||||| |||||||| |||||| Sbjct 480431 GGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCAC 480372 Query 52536 ACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CAC 52594 |||||||| || || || | ||||| ||| | | | | || | || | | Sbjct 480371 ACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC 480312 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 | | ||| || || ||| |||||| ||||| ||||| | | |||||| Sbjct 480311 GTGCTGGAG-ATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCT 480253 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 |||||| |||| | ||||||||| || ||| ||| ||||||||||||| ||||| Sbjct 480252 GCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGC 480193 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTG 52773 ||| || ||| | | |||||| || ||| ||| |||||| ||| | || |||| Sbjct 480192 GGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGC-AGCCATTTG 480134 Query 52774 AGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCG 52833 | || ||| | | || ||||| |||||||||| ||||| ||||||||| || |||| Sbjct 480133 ACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCG 480074 Query 52834 AGTA 52837 |||| Sbjct 480073 AGTA 480070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260842976720