Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq27 109 5e-19 seq22 109 5e-19 >seq27 Length=1026784 Score = 109 bits (120), Expect = 5e-19 Identities = 288/438 (66%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 |||| || || ||| || |||||| ||||||| |||||| || ||| | || | Sbjct 859073 TGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCT 859014 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 |||| | || | ||||| || || ||||| ||||||||||| |||||| ||| Sbjct 859013 GGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAG 858954 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGT 47322 |||||||||||||||| |||| || ||||| | |||||| | || || ||| Sbjct 858953 ACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGC 858894 Query 47323 TGGACGTGCCCACCGTCAGC--GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | || | | || || || || | | || || || ||| ||| ||||| Sbjct 858893 T--ACCCCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTT 858836 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || |||||| ||||| ||||| | |||| Sbjct 858835 CATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTA 858776 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| |||||| | ||| | ||| ||| || | Sbjct 858775 CATCGAGTTCGTGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGC 858716 Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560 | | ||||| || || ||| | | || ||||| |||||||||| ||||| ||||| Sbjct 858715 GACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGA 858656 Query 47561 GAAGCGCGTCGGCGAATA 47578 |||| || ||||| || Sbjct 858655 GAAGAAGGTGGGCGAGTA 858638 >seq22 Length=633148 Score = 109 bits (120), Expect = 5e-19 Identities = 288/438 (66%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 |||| || || ||| || |||||| ||||||| |||||| || ||| | || | Sbjct 480505 TGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCT 480446 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 |||| | || | ||||| || || ||||| ||||||||||| |||||| ||| Sbjct 480445 GGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAG 480386 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGT 47322 |||||||||||||||| |||| || ||||| | |||||| | || || ||| Sbjct 480385 ACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGC 480326 Query 47323 TGGACGTGCCCACCGTCAGC--GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | || | | || || || || | | || || || ||| ||| ||||| Sbjct 480325 T--ACCCCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTT 480268 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || |||||| ||||| ||||| | |||| Sbjct 480267 CATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTA 480208 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| |||||| | ||| | ||| ||| || | Sbjct 480207 CATCGAGTTCGTGGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGC 480148 Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560 | | ||||| || || ||| | | || ||||| |||||||||| ||||| ||||| Sbjct 480147 GACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGA 480088 Query 47561 GAAGCGCGTCGGCGAATA 47578 |||| || ||||| || Sbjct 480087 GAAGAAGGTGGGCGAGTA 480070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499308116240