Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq28 163 3e-35 >seq28 Length=1158465 Score = 163 bits (180), Expect = 3e-35 Identities = 854/1345 (63%), Gaps = 55/1345 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | ||| | || || |||||||| ||||| || | || || | ||||| Sbjct 335614 TAAATGTTCGACGTAAAGGGTTCGAAGCACTCGTTGTTGCCGAGAATCTGTGAAGTGGAC 335555 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || | |||||| || || ||| | | | ||| Sbjct 335554 GCGGTTGGCATGGGGGCCACTAGTAATGAGTTGCGTAGGCCGACCTGCATCACCTTCTCC 335495 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTT---GTCTCCCCCTC--CCACATATCAAAC 116076 |||||| | ||||||| || | ||| | ||| ||| || |||||| |||||| Sbjct 335494 TTGAGGCTGGCCCAGTCCCAGCGGCCGCTGTTCGGTCGCCCGTTCTTCCACATGTCAAAC 335435 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 || || || || | | ||| || |||| ||| |||||||| |||||||| ||| | Sbjct 335434 TGCAGAATGCCCTCGCTCGCCGGGCTGCCCTTAAAGGTCTCATACGGGCCCTCCTCCTTC 335375 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || | || | ||||| || ||| || || ||||| || || | || Sbjct 335374 GCTAGCTCCATCGATGACTCGACTGCGGCGAAGTAGATGGTCTCGAAGATTTCCACGTTT 335315 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256 | || || || | || |||||| ||||| | || || || ||||| Sbjct 335314 AACCTCTGCGCTTCCGCCGAGACAAACGGCAGACGCATGAGGATGAAGGTGTCAGCGAGG 335255 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 || || || || ||||| | ||||| | | ||| || || || | || || Sbjct 335254 CCCTGCACCCCAAGGCCGACGGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGCTTCGACC 335195 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA---TT 116373 || ||| | || | || ||||| | || ||||| |||| |||||| | | Sbjct 335194 GGGTAATAGTTGCGGTCAATAACACGGTTCAGATTGCGCGTGATCTGCTTTGTCACAGTG 335135 Query 116374 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 116433 | |||||| | || | || | ||| |||| | | ||| | || || ||| Sbjct 335134 TAGAGAAGCTGGTGGT--TGAACTC-GCGCTTCTCAACGTCGACGAAGCGGGGCAGCGCG 335078 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 || ||||| || |||||||| | ||||| || |||||||| | ||| || || Sbjct 335077 ATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACGTGTACTCGACAATCTCGGTG 335018 Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 |||| ||||| | ||| || ||||| | |||||| || |||||||| ||||||||||| Sbjct 335017 CACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACACGCA 334958 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAT 116613 |||||||| || || | ||| || ||||| | || |||| || || || ||| Sbjct 334957 TCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAACCAC 334898 Query 116614 ACAT-CGGCGGCTGGCACAGTGGCGTT---GGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | ||| ||| | | | || | | || ||||| |||||| ||| Sbjct 334897 ACCTCCTGCGCCTG----AATCGTCTTCACGCCGCGGCCCTCAGACTCGTAGCGCTCGTA 334842 Query 116670 GAGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 ||| ||| ||| | || || ||| | ||||| |||| || | | || | Sbjct 334841 GAGTCGCTCGAACGCCTCGCCATAGCAGTCGCTGAG-GCCCGGGCATGTGTTGGGGTC-C 334784 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 | || | ||| | || | ||| || ||||||||||| | ||||||| ||| || Sbjct 334783 ATCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACAGA 334724 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGC---AACT 116842 || ||||||| || || |||| ||| || || | ||| || |||| || Sbjct 334723 GCGTAGAAGAGGTCGCG--AGCGCGCTGGTCATCTTTGCCC---GTGTTACGCTTTAAAA 334669 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 || || | | || ||| ||||||||||| || |||||||| |||| | ||||||| Sbjct 334668 GTAAGAACCCGAAGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGC 334609 Query 116903 G---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || ||| |||||| || || | || || ||| || ||||| ||||| || | Sbjct 334608 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTA 334549 Query 116960 TGATACCATCAGATTGGCCATTTGTCCC-CCG-----AATACGAGACTTGTTGGCTCTGA 117013 | || | || ||||| ||||| || | ||| || ||| | || Sbjct 334548 CCAGCCCGTTCGACGTACCATTGGTCCCGGCGATGTAACTACCAG------CGGCACGGA 334495 Query 117014 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGA 117073 | ||| | ||||| || || || || ||| ||| ||| || |||||| | | Sbjct 334494 TGTTGTGCACGTGCAGGCCGATGCCACCGGCCGCCTTACTGATCACGGCACACTCCTTCA 334435 Query 117074 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCG 117130 | || ||||||| || ||||| ||| |||| || | || |||| |||| Sbjct 334434 GCGTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGCT-- 334377 Query 117131 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190 |||||| ||| | || || || |||||||||||||| || || ||||| |||| | | Sbjct 334376 -CATTTGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGC 334318 Query 117191 CTTGGGACATCTTATCGTAGGTCTC 117215 | | |||||| ||||| ||||| Sbjct 334317 CCTTCGACATCAGGTCGTATGTCTC 334293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505275121160