Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27 271 8e-68 seq22 271 8e-68 seq36 86.0 6e-12 >seq27 Length=1026784 Score = 271 bits (300), Expect = 8e-68 Identities = 569/831 (68%), Gaps = 18/831 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||||||||||| ||||| || || || || || |||| Sbjct 858619 CATGACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 858678 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | | |||||||||||| | | | Sbjct 858679 CAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTC-TCCTCAC 858737 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAAT 132769 | || || |||||| | ||| ||||||||||||||||| || | ||| || | | Sbjct 858738 CGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGT 858797 Query 132770 TAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACC 132828 | | || | ||| |||||||||||||| ||| || ||| || |||||||| ||| Sbjct 858798 TCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCACC 858856 Query 132829 GCGTCGGTGACGATTTCCCTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGC---TT 132884 || || || ||| ||| |||||| | || | | | || || | ||| || Sbjct 858857 GCATCCACGATGATCTCCAGCACGCGCTCGCGGGGTAGCTTGT-GCCTGATGTGCGAGTT 858915 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| || || || ||||| |||| ||| ||||| | || ||||| |||||||| Sbjct 858916 GTACAACAGACATGCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCT 858975 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| || ||||| ||||| || || || ||||| || | || ||| ||| Sbjct 858976 GAACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCC 859035 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT- 133063 ||||||||||| |||||| || || || || || | ||| ||||| | ||| | || Sbjct 859036 CGAAAAGAAGATGCCCTCCACCGCGGCAAACGCAATCAGTCGCTC-CTGAAAG---CTCG 859091 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| || | ||||| || ||||| | |||| |||||| ||||| | Sbjct 859092 CGCTGCTCCCAATCCACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCT 859151 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 || |||| || || || | ||||| || | | || | ||| ||||| | || Sbjct 859152 GAATCGCGTGCAGCAGCCGCAACTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 859210 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || || || || ||| Sbjct 859211 ACCGAGTACGTCTCGGAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGC 859270 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| || || || |||| | || || ||| |||||||||| Sbjct 859271 GCCTCCGGCACCTTTACGTCGCTCATAAAGCGCTGCGCGAGGTTCTCGACGACGATGCCG 859330 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 || ||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 859331 TCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTC-AG 859389 Query 133363 CG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 || | ||||||| | |||| ||| ||||| | |||||| || ||||| Sbjct 859390 CGCCACCCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCA 859440 >seq22 Length=633148 Score = 271 bits (300), Expect = 8e-68 Identities = 569/831 (68%), Gaps = 18/831 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||||||||||| ||||| || || || || || |||| Sbjct 480051 CATGACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 480110 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | | |||||||||||| | | | Sbjct 480111 CAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTC-TCCTCAC 480169 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAAT 132769 | || || |||||| | ||| ||||||||||||||||| || | ||| || | | Sbjct 480170 CGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGT 480229 Query 132770 TAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACC 132828 | | || | ||| |||||||||||||| ||| || ||| || |||||||| ||| Sbjct 480230 TCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCACC 480288 Query 132829 GCGTCGGTGACGATTTCCCTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGC---TT 132884 || || || ||| ||| |||||| | || | | | || || | ||| || Sbjct 480289 GCATCCACGATGATCTCCAGCACGCGCTCGCGGGGTAGCTTGT-GCCTGATGTGCGAGTT 480347 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| || || || ||||| |||| ||| ||||| | || ||||| |||||||| Sbjct 480348 GTACAACAGACATGCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCT 480407 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| || ||||| ||||| || || || ||||| || | || ||| ||| Sbjct 480408 GAACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCC 480467 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT- 133063 ||||||||||| |||||| || || || || || | ||| ||||| | ||| | || Sbjct 480468 CGAAAAGAAGATGCCCTCCACCGCGGCAAACGCAATCAGTCGCTC-CTGAAAG---CTCG 480523 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| || | ||||| || ||||| | |||| |||||| ||||| | Sbjct 480524 CGCTGCTCCCAATCCACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCT 480583 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 || |||| || || || | ||||| || | | || | ||| ||||| | || Sbjct 480584 GAATCGCGTGCAGCAGCCGCAACTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 480642 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || || || || ||| Sbjct 480643 ACCGAGTACGTCTCGGAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGC 480702 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| || || || |||| | || || ||| |||||||||| Sbjct 480703 GCCTCCGGCACCTTTACGTCGCTCATAAAGCGCTGTGCGAGGTTCTCGACGACGATGCCG 480762 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 || ||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 480763 TCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTC-AG 480821 Query 133363 CG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 || | ||||||| | |||| ||| ||||| | |||||| || ||||| Sbjct 480822 CGCCACCCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCA 480872 >seq36 Length=2618838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 38354 CGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 |||| ||||| ||||| || || | || ||||| |||||||| || | ||||| || Sbjct 1341399 CGCCAGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGG 1341340 Query 38413 ACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||| ||||| | ||||||||| |||||||||| || | || ||| Sbjct 1341339 CGGACTACAACATCCAGAAGGAGTCCACGCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 1341281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171230707840