Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq125 208 1e-48 seq26 179 5e-40 seq28 147 3e-30 >seq125 Length=1506 Score = 208 bits (230), Expect = 1e-48 Identities = 604/926 (65%), Gaps = 18/926 (2%) Strand=Plus/Minus Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || |||||||| || ||||| | || |||||||| || | | || | || ||| Sbjct 1074 GTCGAGAAGATCTGGCTCTTCTTGGTCGGGATCGTCGTGTTGCGCTTGATCAGCGCCGTC 1015 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | || || || || | || || | ||| || |||||||||| || | |||| Sbjct 1014 ATCACGCCGCCGGCCGTCTCAATGCCCAGCGTCAGCGGCGTCACGTCCAGCAGCAGCAGG 955 Query 6989 TCTTGAACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | | | | | | | ||| | ||||| | |||| || || |||| || |||| Sbjct 954 CCCTC--CGTCTGCTTGCTCTTGCCGCCCGTCAGGATGAACGCCTGCACCGCGGCGCCGT 897 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | ||||| ||||| |||||||| || | || ||||| ||||| ||| || | |||| Sbjct 896 ACGCGACAGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCTTTGCCGCCGAAGAAGTCCG 837 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 | | | || | ||||| || || ||||| || || |||| || | || | || Sbjct 836 ACACGAGCGCCTGCACCTTCGGAATGCGCGTCGACCCGCCCACCAGCACCACGTCGTGCA 777 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || || ||||| | ||| | || || || || | ||| | | Sbjct 776 CGGAGCGCTTGTCCATCTTGGCGTCCTGCAGCACGCGCTCCACCGGCTGCATTGTGCTGC 717 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||||| ||| ||||| ||||| || ||||| || || |||| | | ||| || | Sbjct 716 GGAACAGGTCGCCGCACAGCTCCTCGAAGCGTGCGCGCGTGATGGTGGCCTGGAAGTCGA 657 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 || |||| | | || || || || || || | || | || || || | ||| |||| Sbjct 656 CGTTGTCGAACAGCGCGTCGATCTCGATCGTCGCCTGCGTCGCGGACGACAGCGTGCGCT 597 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 | || ||||| |||||||| || | ||| || || || || || | | | || | Sbjct 596 TCGCCCGCTCGCACGCCGTGCGCAGACGGCGCAGCGCGCGTTGGCTCGTCGTCAGGTCCT 537 Query 7407 T---CTTATGTTTACGTTTAAACTCTTCAGAGAAG----TGTCGAAGGAGTCTCGAATCG 7459 | ||| | || || || ||||| || |||| || ||| | || ||| Sbjct 536 TGCCCTTGTTCTTGCGCTTGAACTCCTCGCTGAAGAACGTGACGAGGCGGTTG----TCG 481 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || || | ||| || || || |||||| || || || ||||| || || Sbjct 480 AAGTCCTCGCCGCCGAGGTGCGTGTCGCCGTTGGTCGCCTTCACCTCGAAGATGCCGCCG 421 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | || || ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 420 TCGATGGTCAGCAGCGTCACATCGAACGTGCCGCCGCCAAGGTCGAAGATGAGCACGTTG 361 Query 7580 GTATCGTCGTCTTTGTT---CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | | | | || ||| || |||||||||||||| ||||||||||| || || Sbjct 360 CGCTCCTTGCCGTCGTCACCCTTGTCTAGACCGTACGCGATGGCCGCCGCCGTCGGCTCG 301 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || | ||||||||| || || | ||||| || ||||| || || Sbjct 300 TTGATGATGCGCAGCACCTCCAGGCCAGCGATCGTGCCAGCATCCTTTGTCGCCTGGCGC 241 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| ||||||||||| ||||| || || || | | | || | ||| || || Sbjct 240 TGCGAGTCGTTGAAGTAGGCCGGCACCGTCACCACGGCCTTCTTCACCTGCTTGCCCAGG 181 Query 7757 TACGATTCCGCGATATCTTTCATTTT 7782 || | || || | || ||||| || Sbjct 180 TATGCCTCAGCCGTCTCCTTCATCTT 155 >seq26 Length=967504 Score = 179 bits (198), Expect = 5e-40 Identities = 732/1137 (64%), Gaps = 35/1137 (3%) Strand=Plus/Minus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || || |||| ||| ||||| |||||||||||||||||||| || | || || ||| Sbjct 384262 GCCTGCACCGCCGCGCCGTACGCGACCGCCTCATCGGGGTTGATAGACCGGTTGAGCTCT 384203 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 || || || | | ||| | ||| || || || |||||||| ||||| ||||| || Sbjct 384202 TTGCCACCGAAGAACTGCGAGACCATCTGCTGGATCTTCGGGATCCGTGTTGATCCTCCA 384143 Query 7148 ACCAAAACGATTTCATTCACTTTC-GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTC 7206 || | || | || | ||| | | || | || || | | |||| || || | Sbjct 384142 ACGAGGACAACGTCGTGCACATCCTGAGGTTTC-ATGTCCGCGTCTGCCAGCACCTTCTT 384084 Query 7207 GACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGT 7266 || || |||| || || ||| || |||| ||||| || || || || || Sbjct 384083 TACTGGCTCCAGGCACTTCTCAAACTGATCGCGGCACATCTCCTCGAAGCGCGCGCGTGT 384024 Query 7267 AATGGATGTATAGAAA---TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 || | | ||||| || ||| ||||||| || || || || ||| ||| Sbjct 384023 GAT---TTTCGAGAAAAAGTCGTGGCCCTCGTATAGCGCGTCGATCTCGATGTTTGCC-- 383969 Query 7324 TGCCGTCGAA---GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 | ||| || || | ||| ||||| ||||||| |||||||| || | || || Sbjct 383968 -GTCGTGGAGCTCGACAGCGTGCGCTTCACGCGCTCGCACGCCGTGCGCAGGCGGCGCGT 383910 Query 7381 GGCACGCGGGTTACCG-GAAATATCTTTCTT--ATGTTTACGT-TTAAACTCTTCAGAGA 7436 ||| || | ||| || | | ||| | | | ||| || | ||| | || Sbjct 383909 GGCGCGGGCGTTGGCGCGGCAGTCCTTGCCGCAACG----CGTCTTCATCTCCGTGGCGA 383854 Query 7437 AGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||| ||||| | || | ||||| || || ||||| | ||| || || ||||||||| Sbjct 383853 AGTAGTCGACG-AGGCGGTTGTCGAAGTCCTCGCCACCGAGGTGCGTGTCGCCCGCGGTC 383795 Query 7496 GCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCA 7555 || || || || || | || |||||| | | || || |||||||| || || || Sbjct 383794 GCCTTCACCTCGAACACGCCAGACTCAATGGTCAGCAGCGTCACATCAAAGGTGCCGCCG 383735 Query 7556 CCCAGGTCAAAAATGAGTACGTTCGT---ATCGTCGTCTTTGTTCTTATCGAGACCGTAC 7612 || ||||| || ||||| |||||| | | | | |||| || || | || || Sbjct 383734 CCAAGGTCGAAGATGAGCACGTTCTTCTCACCTTTGTCTGCCTTGCGGTCCATGCCATAT 383675 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 || || || || || || || || || || || || || ||| ||||| ||||| | Sbjct 383674 GCAATCGCAGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGAG 383615 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | ||||| || ||||| || || ||||| ||||| ||||| |||||||| || | ||| Sbjct 383614 CCGGCATCCTTTGTCGCCTGGCGCTGCGAGTCGTTGAAGTATGCCGGGACAGTGATGACG 383555 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 |||| | | || | | ||||| || | ||||| | || ||||| || || ||| Sbjct 383554 GCGTTCTTCACGGTGGTGCCGAGGTAGGCCTCCGCCGTCTCCTTCATCTTCTGCAGCACC 383495 Query 7793 ATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAAT 7851 || | || |||||||| | | ||| || | | | || | | || || || Sbjct 383494 ATAGCGGAGATCTCTTCTG-GGAAAAAGGTCCTGGACTGGCCCTGGTACTCGACGCTGAT 383436 Query 7852 CATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTG 7911 | ||||| | | ||| | ||||| | | ||| | ||||| || || Sbjct 383435 GACCGGTTTGCCGTCTTTCACGG---TCACCTTGAATGGCCAGTGCTTCATGTCCGACTG 383379 Query 7912 GACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTT 7971 || ||| ||||| | || || || ||||| || || || || ||||| | Sbjct 383378 CACAACCGCGTCGCTGAACTTGCGGCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTG 383319 Query 7972 GGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGT 8031 |||||||| || ||||||||||| ||||| ||||| || || || ||||| Sbjct 383318 CGGGTTCATCGCCACCTGGTTCTTCGCGGCGTCGCCGATCAGGCGCTC---CGAGTCCGT 383262 Query 8032 AAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||||| || ||||| || ||||| || || || |||||||| ||||| || || || Sbjct 383261 GAACGCAACATACGACGGCGTCGTGCGGTTGCCCTGGTCGTTAGCAATGATCTCCACCAT 383202 Query 8092 GTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| | |||||||||||||||| ||||| || || | || || || || || Sbjct 383201 TTCGTTCTTGAAGACGCCGACGCACGAGTACGTCGTGCCGAGGTCGATGCCAATGGC 383145 >seq28 Length=1158465 Score = 147 bits (162), Expect = 3e-30 Identities = 237/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| |||||||| || | || ||||| || ||||| || ||||||| || Sbjct 480302 ATCGAAGTCTTCACCGCCAAGATGGGTATCGCCGTTCGTCGCGACCACCTCAAAGAAGCC 480243 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| | | || || ||||| ||||| |||||||| || || || | ||| | Sbjct 480242 CTCGTCAATCGTCAGCAGGGACACATCGAACGTGCCACCACCGAGATCGAAGACGAGAAT 480183 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | || | | ||||| ||| ||||| ||||| || |||||||| || || Sbjct 480182 GTTCTTCTCCCCCGCCTTGTT------GAGCCCGTAGGCGATGGCGGCCGCCGTCGGCTC 480129 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || || | | ||||||||| ||||| | | || ||||||||||| || || Sbjct 480128 GTTAATGATGCGGACAACGTTCAGGCCGGCAATCTTACCAGCGTCTTTCGTCGCCTGGCG 480069 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||| ||| || ||||| || |||||||| || || || | | | ||||| | |||| Sbjct 480068 CTGCGCATCATTGAAGTACGCTGGGACCGTCACAACGGCATTCTTTACTTTATCGCCGAT 480009 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | | || | ||| || ||||| || || ||||||| Sbjct 480008 GAAGGTCTCGGAGATCTCCTTCATCTTCTGCAGCACCATCG 479968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130807270840