Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28 147 3e-30 seq23 86.0 7e-12 seq24 84.2 3e-11 seq36 82.4 9e-11 seq16 82.4 9e-11 >seq28 Length=1158465 Score = 147 bits (162), Expect = 3e-30 Identities = 551/854 (65%), Gaps = 15/854 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | || || || |||||||| || |||||||| | | Sbjct 335086 GGCAGCGCGATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACGTGTACTCGACA 335027 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| ||| || | ||| ||||| || | ||||| ||||| ||| || Sbjct 335026 ATCTCGGTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTG 334967 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 || |||||||||||||| || ||| | ||| || ||||| |||| |||| || || Sbjct 334966 TTACACGCATCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATG 334907 Query 106637 GCCTTCCACACATCG-GCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 106692 || |||||| || ||| ||| ||| | || ||| || ||||| | |||||| Sbjct 334906 GCAAACCACACCTCCTGCGCCTG----AATCGTCTTCACGCCGCGGCCCTCAGACTCGTA 334851 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCT-TG 106750 |||||| || ||| |||| || | || |||| ||| || || || | || Sbjct 334850 GCGCTCGTAGAGTCGCTCGAACGCCTCGCC-ATAGCAGTCGCTGAGGCCCGG-GCATGTG 334793 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | || | || | ||| | || | ||| || ||||||||||| | ||||| Sbjct 334792 TTGGGGTCCATCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGG 334733 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 | |||||| | | ||||| || | | || || || | || ||| | | Sbjct 334732 ACCCACAGAGCGTAGAAGAGGTCGCGAGCGCGCTGGTCATCTTTGCCCGTGTTACGCTTT 334673 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 || | |||| | | || ||| |||||||| |||||||| || || |||| | ||| Sbjct 334672 AAAAGTAAGAACCCGAAGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCC 334613 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 || || || ||| | || | || ||||| || ||| ||| || ||||| ||||| Sbjct 334612 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATC 334553 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 || | | || | || |||||| ||||| || | | ||| | | Sbjct 334552 GGTACCAGCCCGTTCGACGTACCATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATG 334493 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | || | ||||| || || || || ||| ||| ||| ||||||||| | || Sbjct 334492 TTGTGCACGTGCAGGCCGATGCCACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGC 334433 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || | ||||| |||| ||| ||| ||||| || | || ||||| | ||| Sbjct 334432 GTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATT 334373 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 ||||| | || || || || ||||||||||| || || ||||| |||| | || | Sbjct 334372 TGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGCCCTTC 334313 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| |||||||||||| || || | || ||||||||||||| ||| Sbjct 334312 GACATCAGGTCGTATGTCTCACGCACGTTTTCGAGATCCCGACCGTGGATGCCGAGGGCG 334253 Query 107288 ACACGCATAAACAT 107301 |||||||| ||||| Sbjct 334252 ACACGCATGAACAT 334239 >seq23 Length=759779 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136163 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 136222 || || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||| Sbjct 225143 AGGTCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAAT 225084 Query 136223 CCAGGTAGGA 136232 || ||||||| Sbjct 225083 CCTGGTAGGA 225074 >seq24 Length=824354 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/82 (83%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 614406 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 614465 Query 136224 CAGGTAGGAG---CTTTACCCA 136242 |||||||||| |||| |||| Sbjct 614466 CAGGTAGGAGTGACTTTTCCCA 614487 >seq36 Length=2618838 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1570214 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1570155 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1570154 CAGGTAGGAG 1570145 >seq16 Length=637797 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 404271 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 404212 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 404211 CAGGTAGGAG 404202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978948935240