Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 147 2e-30 >seq6 Length=495072 Score = 147 bits (162), Expect = 2e-30 Identities = 409/612 (67%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 29787 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 29846 ||||||||| | ||| || | || ||||| | |||| || || ||||| || ||||| Sbjct 357281 CTCGAGCTGCGCCTTGAGGGCATCGACGTGGTTGCGGTACACATGGGCGTCGCCGAGGGT 357222 Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| |||| ||| || || | || || | | ||||| | | ||||| || | Sbjct 357221 GTGCACAAGCTCACCAGGCCGCAAGCCTGTCGCCTTCGCCATGAGGATGGTGAGTAGCGC 357162 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||| ||||| ||| ||||| || ||||| ||||| || | ||| | |||||| | | Sbjct 357161 GTAGGAGGCGACGTTGAAGGGAACGCCGAGTCCCATATCGCACGAGCGCTGGTACACCAT 357102 Query 29967 ACACGAGAGCTC--TC-CGTC---GCTCACGTAAAACTGACACATGGTGTGGCACGGAGG 30020 || || | ||| || | || | |||| || |||||| | ||||||||| || Sbjct 357101 GCAGGACAACTCCTTCGCCTCTGAGTTCACATAGAACTGAGCAAGTAAGTGGCACGGCGG 357042 Query 30021 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30080 || ||||| || | | |||||||||||| | || || ||||| || || Sbjct 357041 CAGTGCCATCTCTTTCAGGGCGCGCGGGTTCCAGGCGGTAAAGAGGAGGCGCCGATCGTC 356982 Query 30081 TGGGTTGTTCCTGATGAGGTCCACG---GCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 ||||| | ||| ||| ||| ||| | | ||| ||||||||| || ||| Sbjct 356981 CGGGTTCAAACGGATTGTGTCTACGATCGCGC---GGATCTGGTCCACCCCC-TCGCCGT 356926 Query 30138 G-TAGTCTGCCCTCATGTCCG-TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30195 |||| ||| |||| || |||||||||| ||||| || | ||||||||| ||||| Sbjct 356925 CATAGTTTGCG-TCATAACCTCTGTACTCTGCACCGAAGTGGCGCCACTGGAAGCCGTAG 356867 Query 30196 ACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA--AGCCC-CTCTTGTCCAAAAAGTCT 30252 || || || ||||| ||||| | | |||| ||||| | |||| | ||| || Sbjct 356866 ACAGGGCCGAGGTCCATCTCTT---TATTCTCGGTCAGCCCACGGCTGTCAAGAAACTCG 356810 Query 30253 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG 30312 | || |||||| ||||||| || | | ||||| || | ||| | | ||| || Sbjct 356809 CGCGAGCCGTTGCCGTCCCAAATATGAATGCCCTTATCCGCCAGCAGCTGCGCGTTCGTC 356750 Query 30313 GACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGT 30371 || | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| || Sbjct 356749 TCGCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACGCGCTTTGT 356691 Query 30372 CGTGAGGAGGGG 30383 || ||||| || Sbjct 356690 TGTAAGGAGCGG 356679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616350013223