Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28 235 1e-56 seq27 179 7e-40 seq22 176 8e-39 >seq28 Length=1158465 Score = 235 bits (260), Expect = 1e-56 Identities = 967/1495 (65%), Gaps = 55/1495 (4%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 |||||||| || || |||||| ||| || || | | |||| |||||||| || | Sbjct 335869 AGGTTCAGCGATTGCGACTGGTCAATGTATTGGCCGCGGTCACGAGCCATGTCGATCAGC 335810 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCG 212813 | | ||| | | ||||||||| ||| | | | ||| | |||||||| |||| |||| Sbjct 335809 TTGCGCTGCGGAATCTCCCACACAGTCCGGTAAAGTTCCCTTAGGTCCTCCGGGATGCCG 335750 Query 212814 GGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTC 212870 |||| | | ||||| || | | ||| | | | ||||| | ||| ||| Sbjct 335749 TCGATGCTGAGGACAGAGCCGTTATAGGAAATGATTTCGTTC---CGCATCTGCTCATTC 335693 Query 212871 CAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCT 212930 || || || | | ||| | |||| |||| ||| || | | | || || || Sbjct 335692 CACAGCCCACGAGCGATGAGGTCCATGACGAGGTACTTGTTCACGACCGGAAACTCGCCG 335633 Query 212931 GAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCC 212990 ||||| | | ||||| ||| || || |||| |||| || ||||||||| || Sbjct 335632 CTCAGCACACGGCGGACGTAAATGTTCGACGTAAAGGGTTCGAAGCACTCGTTGTTGCCG 335573 Query 212991 AGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCG 213050 |||||||||| |||| || || |||||||| ||||| || | ||| | | ||| Sbjct 335572 AGAATCTGTGAAGTGGACGCGGTTGGCATGGGGGCCACTAGTAATGAGTTGCGTAGGCCG 335513 Query 213051 TGCTCGCCGATGAGG--CGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCC-T 213105 || || || | | || || ||| ||||||||||| | ||| | | || | Sbjct 335512 ACCT-GC--ATCACCTTCTCCTTGAGGCTG-GCCCAGTCCCAGCGGCCG--CTGTTCGGT 335459 Query 213106 CGTCC-TTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGG 213164 || || ||| ||||||||||||||||||| ||||| | |||| | |||||||||| Sbjct 335458 CGCCCGTTC---TTCCACATGTCAAACTGCAGAATGCCCTCGCTCGCCGGGCTGCCCT-- 335404 Query 213165 TAAGAGGAGT---AGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCG 213221 ||| ||| | | ||||| | |||||| || ||||| || | || | || ||| Sbjct 335403 TAA-AGGTCTCATACGGGCCCTCCTCCTTCGCTAGCTCCATCGATGACTCGACTGCGGCG 335345 Query 213222 TAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGC 213281 |||||||||| || || || ||| ||| | | ||| || || | || || ||| Sbjct 335344 AAGTAGATGGTCTCGAAGATTTCCACGTTTAACCTCTGCGCTTCCGCCGAGACAAACGGC 335285 Query 213282 ATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGT 213341 | |||| | ||| ||||| || ||||| ||||| | ||||| ||| | || Sbjct 335284 AGACGCATGAGGATGAAGGTGTCAGCGAGGCCCTGCACCCCAAGGCCGACGGGGCGGTTG 335225 Query 213342 CTCAGGTTAGACTTGGAGCACTCCTCCAAG-GGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 | || ||| | || || | || | | |||||| |||||| ||| || | ||| Sbjct 335224 CGCATGTT-GCTGCGGCGCGCCGCTTCGACCGGGTAATAGTTGCGGTCAATAACACGGTT 335166 Query 213401 GAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCC 213460 || ||||| ||| | || || ||| | || || ||| |||||| || Sbjct 335165 CAGATTGCGCGTGATCTGCTTTGTCACAGTGTAGAGAAGCTGGTGGTTGAACTCGCGCTT 335106 Query 213461 CCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTG 213520 | | | | || || ||||| |||||| || ||||| || || ||| ||||| Sbjct 335105 CTCAACGTCGACGAAGCGGGGCAGCGCGATGGACGCGAGGTTACACACCGCCGTCTCCTC 335046 Query 213521 AGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTT 213580 | |||||||| | ||||||||||||||||| ||| ||| ||||| ||||| Sbjct 335045 TGGCGACGTGTACTCGACAATCTCGGTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTT 334986 Query 213581 CTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 || ||||||||||| ||| | ||||||||| || ||| | || || ||||| Sbjct 334985 CTTCTGGTTTGACTTGCTGTTACACGCATCCTTGTACAGGATGAACGGCCCGCCTGTCTC 334926 Query 213641 TAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 | ||| ||| |||| || ||| ||| | | |||| | ||| | | | | || Sbjct 334925 GATCTGCGACTCCAGGAT--GGCAAACCACACCT-CCTGCGCCTGA--ATCGTCTTCAC- 334872 Query 213699 GCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTT-GAATTCGTGGCCC---CAGA 213753 || ||| | | || |||||| | |||||||| ||| | ||| | | ||| ||| Sbjct 334871 GCCGCGGCCCTCAGACTCGTAGCGCTCGTAGAG-TCGCTCGAACGCCTCGCCATAGCAGT 334813 Query 213754 CCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGA 213813 | ||| || ||||| || | ||| ||| || |||| | ||| || | | | Sbjct 334812 CGCTG---AGGCCCGGGCATGTGTTGGGGTCCATCAGCGTCCACTTCCCCTCGCCCTTCA 334756 Query 213814 CTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCT 213873 | | || |||||||| || ||||||||||| ||| ||| ||||| | | | | | Sbjct 334755 CACGCTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTCGCGAGCGCGCTGGT 334696 Query 213874 CGTCCACTCCAGAGTTTTTGCGC---AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 | || || | ||| ||| | | || || | |||| || |||||||||| Sbjct 334695 CATCTTTGCCCGTGTTA---CGCTTTAAAAGTAAGAACCCGAAGACATCGGCGTGCCACG 334639 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCGCC---CTGGTCCACCAGCCTGG 213987 |||| | ||| | ||| ||||| ||| | ||| ||||| ||||||||| | || Sbjct 334638 GCTCAAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGG 334579 Query 213988 CCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCG 214047 | ||||||||| |||||| | |||||||||||||| ||| || ||||| || | Sbjct 334578 CGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGACGTACCATTGGTCCCGG 334519 Query 214048 CTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACT 214107 | || || || | ||| | | |||| || | || || ||||||||||| || Sbjct 334518 CGATGTAACTACCAGCGGCACGGATGTTGTGCACGTGCAGGCCGATGCCACCGGCCGCCT 334459 Query 214108 TGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 | ||||| ||| || | ||| || || ||||||| | |||||||| || Sbjct 334458 TACTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCGTC 334404 >seq27 Length=1026784 Score = 179 bits (198), Expect = 7e-40 Identities = 567/864 (66%), Gaps = 21/864 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 858634 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 858693 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| || || | | | ||| || | | ||| || | | ||| Sbjct 858694 CATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCA--CCGAGCGAGATGAGC 858751 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | ||||| ||| |||||||||| | || ||| | ||||||||| || || Sbjct 858752 AGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCATGCCGATCAGC 858811 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||| || | || ||||| ||| || | ||| || ||| | | ||| Sbjct 858812 CGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATGATC 858871 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAG 48133 | | ||||| ||| |||| ||| || | |||| | || | || || Sbjct 858872 TCCAGCACGCG---CTCGCGGGGTAGCTTGTGCCTGATGTGCGAGTTGTACAACAGACAT 858928 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||||||||| || ||||||| ||||| ||| || || Sbjct 858929 GCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCC 858988 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || |||||||| | || ||| ||||| || ||||||||| Sbjct 858989 GGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATG 859048 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || ||||| | || | ||| | ||||| || || || | ||| Sbjct 859049 CCCTCCACCGCGGCAAACGCAATCAGTCGCTC-CTGAAAG-CTCGCGCTGCTCCCA-ATC 859105 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || | ||||| |||||||||||||||||||| || ||||||| || || | | Sbjct 859106 CACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGC 859165 Query 48374 AGCTTCTTGCAC-TCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 ||| | || || ||| || ||||| | || || |||||| | |||| || Sbjct 859166 AGCCGC---AACTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTC 859222 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || | ||||||||| ||||| || | ||||| |||| Sbjct 859223 TCGGAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGCGCCTCCGGCACC 859282 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | || || | || | || | || ||||| ||| || || || | || Sbjct 859283 TTTACGTCGCTCATAAAGCGCTGCGCGAGGTTCTCGACGACGATGCCGTCACTGCCGGCG 859342 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||| || || || || | ||| || ||||| || | | || || |||| || Sbjct 859343 AAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCACCCAGTCC 859402 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTT 48669 | | ||| ||||| ||||| | || ||||| ||||||| | | | | ||| | || Sbjct 859403 TTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTT 859461 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 |||| ||| ||| ||||| |||| Sbjct 859462 GTACTTGCGCCAGATGTCATGATA 859485 >seq22 Length=633148 Score = 176 bits (194), Expect = 8e-39 Identities = 566/864 (66%), Gaps = 21/864 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 480066 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 480125 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| || || | | | ||| || | | ||| || | | ||| Sbjct 480126 CATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCA--CCGAGCGAGATGAGC 480183 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | ||||| ||| |||||||||| | || ||| | ||||||||| || || Sbjct 480184 AGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCATGCCGATCAGC 480243 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||| || | || ||||| ||| || | ||| || ||| | | ||| Sbjct 480244 CGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATGATC 480303 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAG 48133 | | ||||| ||| |||| ||| || | |||| | || | || || Sbjct 480304 TCCAGCACGCG---CTCGCGGGGTAGCTTGTGCCTGATGTGCGAGTTGTACAACAGACAT 480360 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||||||||| || ||||||| ||||| ||| || || Sbjct 480361 GCGAAGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCC 480420 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || |||||||| | || ||| ||||| || ||||||||| Sbjct 480421 GGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATG 480480 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || ||||| | || | ||| | ||||| || || || | ||| Sbjct 480481 CCCTCCACCGCGGCAAACGCAATCAGTCGCTC-CTGAAAG-CTCGCGCTGCTCCCA-ATC 480537 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || | ||||| |||||||||||||||||||| || ||||||| || || | | Sbjct 480538 CACCGTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGC 480597 Query 48374 AGCTTCTTGCAC-TCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 ||| | || || ||| || ||||| | || || |||||| | |||| || Sbjct 480598 AGCCGC---AACTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTC 480654 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || | ||||||||| ||||| || | ||||| |||| Sbjct 480655 TCGGAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGCGCCTCCGGCACC 480714 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | || || | || | || || ||||| ||| || || || | || Sbjct 480715 TTTACGTCGCTCATAAAGCGCTGTGCGAGGTTCTCGACGACGATGCCGTCACTGCCGGCG 480774 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||| || || || || | ||| || ||||| || | | || || |||| || Sbjct 480775 AAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCACCCAGTCC 480834 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTT 48669 | | ||| ||||| ||||| | || ||||| ||||||| | | | | ||| | || Sbjct 480835 TTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTT 480893 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 |||| ||| ||| ||||| |||| Sbjct 480894 GTACTTGCGCCAGATGTCATGATA 480917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529877315840