Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq27 109 1e-18 seq22 105 1e-17 >seq27 Length=1026784 Score = 109 bits (120), Expect = 1e-18 Identities = 349/533 (65%), Gaps = 9/533 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | || ||||| || || | ||| |||||| | | |||| || || | | Sbjct 859441 CTGGACGGTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGCTGAACGA 859382 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 | |||| ||| || ||||| ||||| | || ||||| || | | ||| || || || Sbjct 859381 CGGGGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCGT 859322 Query 25632 GAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGT 25689 |||||| || ||| || | || | || || || || |||||| | | || Sbjct 859321 CGTCGAGAACCTC-GCGCAGCGCTTTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGT 859263 Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 | ||| || |||||| || || || || | ||||| ||| ||| | ||| ||| Sbjct 859262 T-CTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTGCTG 859204 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACAT 25808 |||||||| || ||| || |||| || | |||||| | || || || || Sbjct 859203 GACACGTACATCACGGACAGCGAGGAGA-AGTTGCGGCTGCTGCACGCGATTCAGACGAT 859145 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868 || ||||||||| |||||| |||||| | |||||| ||| ||||| | Sbjct 859144 CCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGC---AGCGCGAG 859088 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 ||| ||||| ||| | || ||||| || |||||||||||||| || || ||||| Sbjct 859087 CTTTCAGGAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTT 859028 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 || | |||||||| ||| || || ||||| |||||| || |||||| Sbjct 859027 CTGTGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGA 858968 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||| | ||||| || || |||| || || || || ||| | |||| Sbjct 858967 GCTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACA 858915 >seq22 Length=633148 Score = 105 bits (116), Expect = 1e-17 Identities = 346/532 (65%), Gaps = 7/532 (1%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | || ||||| || || | ||| |||||| | | |||| || || | | Sbjct 480873 CTGGACGGTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGCTGAACGA 480814 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 | |||| ||| || ||||| ||||| | || ||||| || | | ||| || || || Sbjct 480813 CGGGGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCGT 480754 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTT 25690 |||||| || || | || | || || || || |||||| | | ||| Sbjct 480753 CGTCGAGAACCTCGCACAGCGCTTTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTT 480694 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 ||| || |||||| || || || || | ||||| ||| ||| | ||| ||| Sbjct 480693 -CTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTGCTGG 480635 Query 25751 TGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATA 25809 |||||||| || ||| || |||| || | |||||| | || || || || Sbjct 480634 ACACGTACATCACGGACAGCGAGGAGA-AGTTGCGGCTGCTGCACGCGATTCAGACGATC 480576 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 || ||||||||| |||||| |||||| | |||||| ||| ||||| | Sbjct 480575 CCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGC---AGCGCGAGC 480519 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 ||| ||||| ||| | || ||||| || |||||||||||||| || || ||||| Sbjct 480518 TTTCAGGAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTC 480459 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | |||||||| ||| || || ||||| |||||| || ||||||| Sbjct 480458 TGTGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAG 480399 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||| | ||||| || || |||| || || || || ||| | |||| Sbjct 480398 CTCATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACA 480347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841885749440