Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28 118 1e-21 >seq28 Length=1158465 Score = 118 bits (130), Expect = 1e-21 Identities = 549/863 (64%), Gaps = 15/863 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||||||||||| ||||| ||||||||||||| || | || || Sbjct 334230 CCGCAGCAGATGTTCATGCGTGTCGCCCTCGGCATCCACGGTCGGGATCTCGAAAACGTG 334289 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 |||||||||||| |||||| | || | |||| ||||| || || ||||||||| Sbjct 334290 CGTGAGACATACGACCTGATGTCGAAGGGCTTCTTCACACACGCCACTCCGACCCTCTTC 334349 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | ||||| ||| | ||||| || | || ||||| ||| Sbjct 334350 AACGCAGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTTCTGGTGGCGTCGAAGGACGAC 334409 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| |||| ||||| | || || | ||||||||| ||| ||| ||| || Sbjct 334410 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGTAAGGCGGCCGGT 334469 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || || || ||||| | || | | | ||| | | || ||||| ||| Sbjct 334470 GGCATCGGCCTGCACGTGCACAACATCCGTGCCGCTGGTAGTTACATCGCCGGGACCAAT 334529 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 ||| || | || | | || ||||| ||||| || ||| ||| || ||||| || Sbjct 334530 GGTACGTCGAACGGGCTGGTACCGATGCTGCGCGTCTTCAACAACACCGCCCGCTACGTG 334589 Query 75572 AATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCC 75628 | || | || || |||||||| || |||| || ||| | || || ||||| ||| Sbjct 334590 GACCAGGGTGGCGGTAAGCGCAAGGGTGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCC 334649 Query 75629 GATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGA 75688 ||| || | | |||| | ||| | ||| || | || || || | | Sbjct 334650 GATGTCTTCGGGTTCTTACTTTTAAAGCGTAACACGGGCAAAGATGACCAGCGCGCTCGC 334709 Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 || ||||| | | |||||| | ||||| | ||||||||||| || ||| | || Sbjct 334710 GACCTCTTCTACGCTCTGTGGGTCCCAGATTTGTTCATGAAGCGTGTGAAGGGCGAGGGG 334769 Query 75749 CAATGGTCTCTTTTCTGTCCAGACA-AGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGG 75806 | ||| | || | || ||| | || || || ||| |||| || | || |||| Sbjct 334770 AAGTGGACGCTGATGGACCCCAACACATGC-CCGGGCCTCAGCGACTGCTAT-GGCGAGG 334827 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCC---AATGCGACTGTAC 75863 ||| || |||||| || || ||||| | | | || ||| | Sbjct 334828 CGTTCGAGCGACTCTACGAGCGCTACGAGTCTGAGGGCCGCGGCGTGAAGACGATT---- 334883 Query 75864 CAGCCGC-CGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 ||| ||| || || ||| || || || | || |||| ||||| || || | Sbjct 334884 CAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACAGGCGGGCCGTTC 334943 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 || || ||||||||||| ||||||| ||| ||||| ||||| | || || |||||| Sbjct 334944 ATCCTGTACAAGGATGCGTGTAACAGCAAGTCAAACCAGAAGAACCTCGGCACGATCAAG 335003 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||||||| || ||||| || ||| | |||||||| || |||||||| || || Sbjct 335004 TGCTCAAACCTGTGCACCGAGATTGTCGAGTACACGTCGCCAGAGGAGACGGCGGTGTGT 335063 Query 76043 AATTTGGCATCAATCGCCCTTCC 76065 || | || || ||||| || || Sbjct 335064 AACCTCGCGTCCATCGCGCTGCC 335086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567728262880