Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq26 176 6e-39 seq125 163 4e-35 seq28 131 2e-25 >seq26 Length=967504 Score = 176 bits (194), Expect = 6e-39 Identities = 458/693 (66%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || ||||| ||||| | || || || ||||| || || || || | | || || Sbjct 383145 GCCATTGGCATCGACCTCGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGAAATG 383204 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || | || ||||| || ||||| || || || ||||| ||||| || || Sbjct 383205 GTGGAGATCATTGCTAACGACCAGGGCAACCGCACGACGCCGTCGTATGTTGCGTTCACG 383264 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || || | || || ||||| || || ||| || |||||||| ||| Sbjct 383265 GACTCGGAGCGCCTGATCGGCGACGCCGCGAAGAACCAGGTGGCGATGAACCCGCACAAC 383324 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || || ||||||||||| || ||||| |||||||| || | || || Sbjct 383325 ACGGTGTTCGACGCGAAGCGCCTGATTGGCCGCAAGTTCAGCGACGCGGTTGTGCAGTCG 383384 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| | | || || | || | Sbjct 383385 GACATGAAGCACTGGCCAT-TCAAGGTGA--CCGTGAAAGACGGCAAACCGGTCATCAGC 383441 Query 195599 GTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | || || || | || ||| | || ||||| || || |||||||| | Sbjct 383442 GTCGAGTACCAGGGCCAGTCCAGGACCTTTTTC-CCAGAAGAGATCTCCGCTATGGTGCT 383500 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| ||||| | | | | || | || ||||| | || || | Sbjct 383501 GCAGAAGATGAAGGAGACGGCGGAGGCCTACCTCGGCACCACCGTGAAGAACGCCGTCAT 383560 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||||| || || ||||||| || || || || |||||||||||||| || | | || Sbjct 383561 CACTGTCCCGGCATACTTCAACGACTCGCAGCGCCAGGCGACAAAGGATGCCGGCTCCAT 383620 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||| || || ||| || | || ||||| || || || || ||||| ||||| ||||| Sbjct 383621 TGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCTGCGATTGCATATGG 383680 Query 195838 TCTGGACAAGAACAAGGACGAA---GATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 ||||| || ||| || || || || || | ||||| || || || || || Sbjct 383681 CATGGACCGCAAGGCAGACAAAGGTGAGAAGAACGTGCTCATCTTCGACCTTGGCGGCGG 383740 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 || |||||||| | || || | ||||| ||| | ||||| || ||||| || || Sbjct 383741 CACCTTTGATGTGACGCTGCTGACCATTGAGTCTGGCGTGTTCGAGGTGAAGGCGACCGC 383800 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || ||||| || || ||||| Sbjct 383801 GGGCGACACGCACCTCGGTGGCGAGGACTTCGA 383833 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 196287 TTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCT 196346 ||||||| || ||||||||||| || || |||||||| || |||||| | || |||| Sbjct 384133 TTGTCCTCGTTGGAGGATCAACACGGATCCCGAAGATCCAGCAGATGGTCTCGCAGTTCT 384192 Query 196347 TCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGG 196406 || | ||||| | ||| | |||||||| ||||| || || || || || |||| Sbjct 384193 TCGGTGGCAAAGAGCTCAACCGGTCTATCAACCCCGATGAGGCGGTCGCGTACGGCGCGG 384252 Query 196407 CCGTTCAGGCTGCTATTCTCTCAGGTGTTGA---CAATAATAACGTCCAAGATCTTCTGC 196463 | || ||||| |||||| | |||| | | | ||| |||| | | || |||| Sbjct 384253 CGGTGCAGGCGCACATTCTCGCCGGTGGTCAGTCCTCTAA-AACG--GATGGGCTGCTGC 384309 Query 196464 TACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACT 196519 | || ||||| |||| | || || ||| | || || || || || || ||| || Sbjct 384310 TGCTCGATGTGACACCGCTCTCGCTCGGTGTGGAGACTGCCGGCGGCGTCATGTCT 384365 >seq125 Length=1506 Score = 163 bits (180), Expect = 4e-35 Identities = 774/1223 (63%), Gaps = 10/1223 (1%) Strand=Plus/Plus Query 195647 TCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAA 195706 || ||||||||| | |||||||||||||| || || | | | |||| || ||||| Sbjct 140 TCGATGGTGTTGCTGAAGATGAAGGAGACGGCTGAGGCATACCTGGGCAAGCAGGTGAAG 199 Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 | || || ||||| || || || ||||||| || || || || |||||||||||||| Sbjct 200 AAGGCCGTGGTGACGGTGCCGGCCTACTTCAACGACTCGCAGCGCCAGGCGACAAAGGAT 259 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 |||| | || || || || | || | || ||||| || || || ||||| || Sbjct 260 GCTGGCACGATCGCTGGCCTGGAGGTGCTGCGCATCATCAACGAGCCGACGGCGGCGGCC 319 Query 195827 ATTGCTTATGGTCTGGACAAG---AACAAGGACGAAGATAAAAATGTATTGATCTTTGAT 195883 || || || ||||| |||||| || | | | | || || || | ||||| || Sbjct 320 ATCGCGTACGGTCTAGACAAGGGTGACGACGGCAAGGAGCGCAACGTGCTCATCTTCGAC 379 Query 195884 CTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTA 195943 || || || || ||||| ||||| | || || | || || || || || ||||| || Sbjct 380 CTTGGCGGCGGCACGTTCGATGTGACGCTGCTGACCATCGACGGCGGCATCTTCGAGGTG 439 Query 195944 AAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CG 196002 ||||| || || || || || || || || || || ||||| || || || || Sbjct 440 AAGGCGACCAACGGCGACACGCACCTCGGCGGCGAGGACTTCGACAACCGCCTCGTCACG 499 Query 196003 TCATTTGTCTGATGAGTTCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTA- 196058 | || | || |||||| || ||||| ||| || || | | | | || | Sbjct 500 TTCTTCAGC-GAGGAGTTCAAGCGCAAGAACAAGGGCAAGGACCTGAC-GACGAGCCAAC 557 Query 196059 GGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGG 196118 | || || || || || | || || || || || || || || || || || || || Sbjct 558 GCGCGCTGCGCCGTCTGCGCACGGCGTGCGAGCGGGCGAAGCGCACGCTGTCGTCCGCGA 617 Query 196119 CTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTA 196178 | || | | | | ||||| || || |||| ||| | |||||| | | || || | Sbjct 618 CGCAGGCGACGATCGAGATCGACGCGCTGTTCGACAACGTCGACTTCCAGGCCACCATCA 677 Query 196179 CCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTG 196238 | || ||||| || || ||| | | || |||| | | ||| | || || | Sbjct 678 CGCGCGCACGCTTCGAGGAGCTGTGCGGCGACCTGTTCCGCAGCACAATGCAGCCGGTGG 737 Query 196239 AACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGG 196298 | | || || | ||||| |||||||| ||| || | || | || || |||| Sbjct 738 AGCGCGTGCTGCAGGACGCCAAGATGGACAAGCGCTCCGTGCACGACGTGGTGCTGGTGG 797 Query 196299 GAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAG 196358 | || || || || ||||||||| | || | | | || ||||||| |||| Sbjct 798 GCGGGTCGACGCGCATTCCGAAGGTGCAGGCGCTCGTGTCGGACTTCTTCGGCGGCAAAG 857 Query 196359 ATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTG 196418 | | ||||| | |||||||| || || || || || || || || || || ||||| Sbjct 858 AGCTGAACAAGAGCATCAACCCCGACGAGGCTGTCGCGTACGGCGCCGCGGTGCAGGCGT 917 Query 196419 CTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCAC 196478 || || | || | | | || | | | || ||||| || || || | | Sbjct 918 TCATCCTGACGGGCGGCAAGAGCAAGCAGACGGAGGGCCTGCTGCTGCTGGACGTGACGC 977 Query 196479 CCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACA 196538 | | | ||||| |||| || || || || || ||||| | || | | |||| Sbjct 978 CGCTGACGCTGGGCATTGAGACGGCCGGCGGCGTGATGACGGCGCTGATCAAGCGCAACA 1037 Query 196539 CAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTG 196598 | || || ||||| |||||| || |||| || || || | || || || || || | Sbjct 1038 CGACGATCCCGACCAAGAAGAGCCAGATCTTCTCGACCTACGCGGACAACCAGCCTGGCG 1097 Query 196599 TTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAA 196658 | || || || || | || || || ||| || | ||||| ||| || || || | Sbjct 1098 TGCACATCCAGGTCTTCGAGGGCGAGCGCGCCATGACGAAGGACTGCCACCTGCTGGGCA 1157 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718 | ||||| || | || || || | || || | || || || ||||| | || | Sbjct 1158 CCTTCGACCTGTCCGGCATCCCGCCGGCGCCGCGCGGCGTGCCGCAGATCGAGGTGACAT 1217 Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778 |||| | ||||| || || || || ||||| | || ||||| |||| | ||||| Sbjct 1218 TCGACCTCGACGCGAACGGCATCCTGAACGTGTCCGCAGAGGAGAAGGGCACCGGCAAGC 1277 Query 196779 CTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTA 196838 | | || || ||||| |||||||| ||||| ||||| || || || || | Sbjct 1278 GCAACCATATCACCATCACCAACGACAAGGGCCGGCTGAGCAAGGACGAGATCGAGCGCA 1337 Query 196839 TGGTTCAAGATGCGGAAAAGTAC 196861 |||| | ||||||| | |||| Sbjct 1338 TGGTGAACGATGCGGCCAGGTAC 1360 >seq28 Length=1158465 Score = 131 bits (144), Expect = 2e-25 Identities = 232/339 (68%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 195650 ATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGAT 195709 |||||| || ||||||||||||| | || | ||||| || | | || || || Sbjct 479970 ATGGTGCTGCAGAAGATGAAGGAGATCTCCGAGACCTTCATCGGCGATAAAGTAAAGAAT 480029 Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || |||||||| || || || ||||||| |||| | || || |||||||| || |||||| Sbjct 480030 GCCGTTGTGACGGTCCCAGCGTACTTCAATGATGCGCAGCGCCAGGCGACGAAAGACGCT 480089 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | ||||| || || ||| | | | || || || || || || ||||| || || Sbjct 480090 GGTAAGATTGCCGGCCTGAACGTTGTCCGCATCATTAACGAGCCGACGGCGGCCGCCATC 480149 Query 195830 GCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || || || || ||||||| | || || || | | |||| ||||||||| Sbjct 480150 GCCTACGGGCT------CAACAAGGCGGGGGAGAAGAACATTCTCGTCTTCGATCTCGGT 480203 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 ||||| ||||| ||||| || || || | ||||| | || | || || || || Sbjct 480204 GGTGGCACGTTCGATGTGTCCCTGCTGACGATTGACGAGGGCTTCTTTGAGGTGGTCGCG 480263 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || ||||| ||||| || |||||||| |||||| Sbjct 480264 ACGAACGGCGATACCCATCTTGGCGGTGAAGACTTCGAT 480302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860335956720