Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 167 3e-35 seq27 147 3e-29 seq22 147 3e-29 seq31 104 3e-16 >seq28 Length=1158465 Score = 167 bits (184), Expect = 3e-35 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| |||||||| ||||| || || || ||||| || Sbjct 334595 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGA 334536 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | || ||||| || || | ||| || ||||| || | |||||| || | ||| Sbjct 334535 CGTACCATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGTGCACGTGCAGGCC 334476 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||| ||| ||| | || |||| || ||||||||||||||||| || Sbjct 334475 GATGCCACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTC 334416 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| |||| ||||| |||| ||||||||||| ||||||| | || ||||| Sbjct 334415 GATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 334356 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| || || || || ||||| || | |||||| |||||| || Sbjct 334355 TGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGCCCTTCGACATCAGGTCGTATGT 334296 >seq27 Length=1026784 Score = 147 bits (162), Expect = 3e-29 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||||||||| | |||||| ||||| |||||||||| ||||||||| Sbjct 858629 GCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATC 858688 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | || || | | || ||||||||||| || |||||||| | Sbjct 858689 ATCTCCATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCACCGAGCGAGATG 858748 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || || |||||||||||||| ||| | | | |||||||||||| Sbjct 858749 AGCAGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCATGCCGATC 858808 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || |||||| Sbjct 858809 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATG 858868 Query 868931 ATCT 868934 |||| Sbjct 858869 ATCT 858872 Score = 145 bits (160), Expect = 9e-29 Identities = 203/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || | |||||| || || || || | | |||| | ||| | Sbjct 859226 GAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGCGCCTCCGGCACCTTT 859285 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || || ||||||||| | ||||||||||| ||| ||||||| Sbjct 859286 ACGTCGCTCATAAAGCGCTGCGCGAGGTTCTCGACGACGATGCCGTCACTGCCGGCGAAG 859345 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||||||||| ||||| ||||| ||||| | |||| |||||||| Sbjct 859346 AAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 859405 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || |||||| | |||||| | |||||||| || ||| || |||||| Sbjct 859406 ATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC 859465 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGG 869917 | ||| | | || || |||| ||||||||||| ||||| Sbjct 859466 TTGCGCCAGATGTCATGATACTGGATCGGGAAGAGGACGTAGCGG 859510 Score = 93.3 bits (102), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | |||||||| || | || || ||||| ||||| |||||| Sbjct 858947 CCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGGCCACGCTTC 859006 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | || ||||| |||||| || ||||||||||| || |||||||| Sbjct 859007 TTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCTCCACCGCGGCAAAC 859066 Query 869300 CCGATGAGCCGCTC 869313 | || || ||||| Sbjct 859067 GCAATCAGTCGCTC 859080 >seq22 Length=633148 Score = 147 bits (162), Expect = 3e-29 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||||||||| | |||||| ||||| |||||||||| ||||||||| Sbjct 480061 GCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATC 480120 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | || || | | || ||||||||||| || |||||||| | Sbjct 480121 ATCTCCATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCACCGAGCGAGATG 480180 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || || |||||||||||||| ||| | | | |||||||||||| Sbjct 480181 AGCAGTCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCATGCCGATC 480240 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || |||||| Sbjct 480241 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATG 480300 Query 868931 ATCT 868934 |||| Sbjct 480301 ATCT 480304 Score = 145 bits (160), Expect = 9e-29 Identities = 203/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || | |||||| || || || || | | |||| | ||| | Sbjct 480658 GAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGCGCCTCCGGCACCTTT 480717 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || || ||||||||| | ||||||||||| ||| ||||||| Sbjct 480718 ACGTCGCTCATAAAGCGCTGTGCGAGGTTCTCGACGACGATGCCGTCACTGCCGGCGAAG 480777 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||||||||| ||||| ||||| ||||| | |||| |||||||| Sbjct 480778 AAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 480837 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || |||||| | |||||| | |||||||| || ||| || |||||| Sbjct 480838 ATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC 480897 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGG 869917 | ||| | | || || |||| ||||||||||| ||||| Sbjct 480898 TTGCGCCAGATGTCATGATACTGGATCGGGAAGAGGACGTAGCGG 480942 Score = 93.3 bits (102), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | |||||||| || | || || ||||| ||||| |||||| Sbjct 480379 CCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGGCCACGCTTC 480438 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | || ||||| |||||| || ||||||||||| || |||||||| Sbjct 480439 TTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCTCCACCGCGGCAAAC 480498 Query 869300 CCGATGAGCCGCTC 869313 | || || ||||| Sbjct 480499 GCAATCAGTCGCTC 480512 >seq31 Length=625104 Score = 104 bits (114), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 507097 CCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCG 507156 |||| |||||| | ||||| ||| | || || | ||||| || ||||||||||| Sbjct 454011 CCTCACGGAGCGACTGAAGGGTAAGTACGGCCGGCTGCGCGGTAACCTGATGGGCAAGCG 453952 Query 507157 CGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGT 507216 ||| ||||| | |||||| | ||||||| | |||||| | |||||| | || ||||| Sbjct 453951 CGTAGACTTTTCGGCGCGCACGGTCATCACCGGCGACCCGAACATCGACGTCGATGAGGT 453892 Query 507217 GGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 |||||||| | ||| || |||||| |||||||| ||||| |||| Sbjct 453891 TGGCGTGCCGTTCTCCGTCGCCATGACGCTGACCTTTCCGGAGCGTGTGA 453842 Score = 87.8 bits (96), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| |||||| ||||| || |||| | ||||||| Sbjct 13086 CGAGATGGACCCGTCGATGATCCTCGGCATCTGCGCCTCCATTATTCCGTACCCCAACCA 13027 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| | |||||||||| |||||| | || ||||| |||||| Sbjct 13026 CAACCAGTCCCCGCGCAACACGTACCAGTCCGCTATGGGGAAGCAG 12981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107118601764567