Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq28 152 8e-31 seq27 145 1e-28 seq22 145 1e-28 seq31 116 6e-20 >seq28 Length=1158465 Score = 152 bits (168), Expect = 8e-31 Identities = 192/264 (73%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| |||||||| ||||| || || || ||||| || Sbjct 334595 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGA 334536 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | || ||||| || || | ||| || | ||| || | |||||| || | ||| Sbjct 334535 CGTACCATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGTGCACGTGCAGGCC 334476 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||||||||| ||| | || |||| |||||||| ||||||||||| || Sbjct 334475 GATGCCACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTC 334416 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||| ||||| ||| |||||||||||| ||||||| || ||||| Sbjct 334415 GATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 334356 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 || |||||||| || || || || Sbjct 334355 TGCGTTGAAGAGGGTCGGAGTGGC 334332 Score = 89.7 bits (98), Expect = 8e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || || || || | | | ||| |||| ||| || || | ||| |||| Sbjct 335694 TCCACAGCCCACGAGCGATGAGGTCCATGACGAGGTACTTGTTCACGACCGGAAACTCGC 335635 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| ||||| ||| ||||| ||| | | ||| | |||| |||||| Sbjct 335634 CGCTCAGCACACGGCGGACGTAAATGTTCGACGTAAAGGGTTCGAAGCACTCGTTGTTGC 335575 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 | || ||||| || || | || || |||||| | ||||| || | |||||||| |||| Sbjct 335574 CGAGAATCTGTGAAGTGGACGCGGTTGGCATGGGGGCCACTAGTAATGAGTTGCGTAGGC 335515 Query 2069744 CGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792 || ||| |||| | || ||| | ||||||||||||||||||| Sbjct 335514 CGACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGGCCGCT 335466 >seq27 Length=1026784 Score = 145 bits (160), Expect = 1e-28 Identities = 197/274 (72%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||||| |||||| ||| ||||||| ||||| ||||||||||| | |||| Sbjct 858602 GACGTCCCCTCCGTGCTCA---TGACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCG 858658 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| |||||||||| |||||||||| |||||| | || || | | || Sbjct 858659 AAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTCGCG 858718 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 |||||||||||| |||||||| ||||| ||||| || ||||| || |||||| Sbjct 858719 TTGTAGTGCTTCTCCTCACCGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATGTAC 858778 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| | | | |||||||||||| ||| ||| ||||||| |||| || ||| Sbjct 858779 TGTGCCATCAACTCCGAGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 858838 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 || |||||| | || || || | |||||||| Sbjct 858839 TCGCGCTCGATGTTCACCGCATCCACGATGATCT 858872 Score = 138 bits (152), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||| ||||| || |||||||| | ||||||||| Sbjct 859271 GCCTCCGGCACCTTTACGTCGCTCATAAAGCGCTGCGCGAGGTTCTCGACGACGATGCCG 859330 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| ||||||| |||||||| ||||||||||| ||||| ||||| ||||| | ||| Sbjct 859331 TCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 859390 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| | ||||| ||||||||||| |||||| | ||||| | | || | Sbjct 859391 GCCACCCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 859450 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || || || |||| ||||| || || |||| Sbjct 859451 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGATACTGGATCGGGAAGAGGACGTAGCGG 859510 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||||| | |||||||||| Sbjct 859511 AACGGATTCTCCTGCTGCAGCGGCTC 859536 Score = 111 bits (122), Expect = 2e-18 Identities = 218/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| | |||||||| || || || ||||| ||||| |||||| Sbjct 858947 CCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGGCCACGCTTC 859006 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | |||||||| |||||| || ||||||||||| || |||||||| Sbjct 859007 TTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCTCCACCGCGGCAAAC 859066 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| ||| | | || | | |||||| | |||||| Sbjct 859067 GCAATCAGTCGCTCCTGAAAGCTCGCGCTGCTCCC------AATCCACCGTACAGCCCAC 859120 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 |||||||| ||| | | | || | ||| | || ||| | | || | |||||| Sbjct 859121 TCTGCCTTCTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGCAGCCGCAACTTCTCC 859180 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||| ||| ||| ||||| | || | |||||| ||||| ||||| ||||| || Sbjct 859181 TCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCGGAGTGAATGTTCTCC 859240 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| ||||| || Sbjct 859241 ATCATCAGCTGGAACCCATAGAA 859263 >seq22 Length=633148 Score = 145 bits (160), Expect = 1e-28 Identities = 197/274 (72%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||||| |||||| ||| ||||||| ||||| ||||||||||| | |||| Sbjct 480034 GACGTCCCCTCCGTGCTCA---TGACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCG 480090 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| |||||||||| |||||||||| |||||| | || || | | || Sbjct 480091 AAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCAAATGGCTGCGTCGCG 480150 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 |||||||||||| |||||||| ||||| ||||| || ||||| || |||||| Sbjct 480151 TTGTAGTGCTTCTCCTCACCGAGCGAGATGAGCAGTCGGTCCGCCACGAACTCGATGTAC 480210 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| | | | |||||||||||| ||| ||| ||||||| |||| || ||| Sbjct 480211 TGTGCCATCAACTCCGAGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 480270 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 || |||||| | || || || | |||||||| Sbjct 480271 TCGCGCTCGATGTTCACCGCATCCACGATGATCT 480304 Score = 138 bits (152), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||| ||||| || |||||||| | ||||||||| Sbjct 480703 GCCTCCGGCACCTTTACGTCGCTCATAAAGCGCTGTGCGAGGTTCTCGACGACGATGCCG 480762 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| ||||||| |||||||| ||||||||||| ||||| ||||| ||||| | ||| Sbjct 480763 TCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 480822 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| | ||||| ||||||||||| |||||| | ||||| | | || | Sbjct 480823 GCCACCCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 480882 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || || || |||| ||||| || || |||| Sbjct 480883 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGATACTGGATCGGGAAGAGGACGTAGCGG 480942 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||||| | |||||||||| Sbjct 480943 AACGGATTCTCCTGCTGCAGCGGCTC 480968 Score = 111 bits (122), Expect = 2e-18 Identities = 218/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| | |||||||| || || || ||||| ||||| |||||| Sbjct 480379 CCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGGCCACGCTTC 480438 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | |||||||| |||||| || ||||||||||| || |||||||| Sbjct 480439 TTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCTCCACCGCGGCAAAC 480498 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| ||| | | || | | |||||| | |||||| Sbjct 480499 GCAATCAGTCGCTCCTGAAAGCTCGCGCTGCTCCC------AATCCACCGTACAGCCCAC 480552 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 |||||||| ||| | | | || | ||| | || ||| | | || | |||||| Sbjct 480553 TCTGCCTTCTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGCAGCCGCAACTTCTCC 480612 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||| ||| ||| ||||| | || | |||||| ||||| ||||| ||||| || Sbjct 480613 TCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCGGAGTGAATGTTCTCC 480672 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| ||||| || Sbjct 480673 ATCATCAGCTGGAACCCATAGAA 480695 >seq31 Length=625104 Score = 116 bits (128), Expect = 6e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 ||||||| | ||||| ||| | |||||| | ||||| || |||||||||||||| | Sbjct 454005 GGAGCGACTGAAGGGTAAGTACGGCCGGCTGCGCGGTAACCTGATGGGCAAGCGCGTAGA 453946 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||||||| | ||||||| |||||| | |||||| | || ||||| ||||| Sbjct 453945 CTTTTCGGCGCGCACGGTCATCACCGGCGACCCGAACATCGACGTCGATGAGGTTGGCGT 453886 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 ||| | ||| || |||||| |||||||| ||||| |||| Sbjct 453885 GCCGTTCTCCGTCGCCATGACGCTGACCTTTCCGGAGCGTGTGA 453842 Score = 91.5 bits (100), Expect = 2e-12 Identities = 209/303 (69%), Gaps = 19/303 (6%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| |||||| ||||| || || | ||||||| Sbjct 13086 CGAGATGGACCCGTCGATGATCCTCGGCATCTGCGCCTCCATTATTCCGTACCCCAACCA 13027 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| |||||| | || ||||| |||||| || || | | | Sbjct 13026 CAACCAGTCCCCGCGCAACACGTACCAGTCCGCTATGGGGAAGCAGGCCATGGGCAT--T 12969 Query 653014 GTCG-CTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCA 653070 || ||| ||| | | || || ||| |||||| | |||| ||||| |||||| || Sbjct 12968 TACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCTCA 12910 Query 653071 GGTGCCGCTGGTGCAGAC---GGCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCG 653125 |||||| |||| || |||||| ||||| ||| | || ||| ||| || Sbjct 12909 AAAGCCGCTCGTGCGCACAAAGGCCAT----GACGTACATGCACAGCAACG-ACCTGCCC 12855 Query 653126 ATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGAC---CCCTACAACCAGGAGGACTCG 653182 ||||| || || ||||||||| | || || |||||||||||||||||| Sbjct 12854 GCCGGCCACAACGCCGTGGTGGCCATCGCGTGCTACAGTGGGTACAACCAGGAGGACTCG 12795 Query 653183 CTC 653185 || Sbjct 12794 ATC 12792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916219699985189