Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq28 448 5e-121 seq27 210 2e-49 seq22 210 2e-49 seq8 84.2 2e-11 >seq28 Length=1158465 Score = 448 bits (496), Expect = 5e-121 Identities = 1192/1797 (66%), Gaps = 53/1797 (3%) Strand=Plus/Minus Query 147913 CGGCCACGGTAAACGCCTGCGAGTAGGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCG 147972 || ||||||||||| || | || |||| | ||||||| ||||| | ||||| Sbjct 336000 CGTCCACGGTAAACTTGATCGCATCCGCTGCGGCCTTGGTGCGCAAGTAGTAGACGCCCG 335941 Query 147973 TCTTGAGGCCCATGCGCCATGC-GTAGTCGTGCACCGACGACATGAGCGTGTACGTCGGG 148031 |||| || |||| | || || |||| | ||| || | || | | || ||| Sbjct 335940 TCTTCAG-CCCAGCCTCCCAGCAGTAGAAGAGCATAGATGTGATCTGGCCAGAGGTAGGG 335882 Query 148032 TGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCC 148091 | ||| ||| || || | ||| || |||||||||| | ||| |||||| ||| Sbjct 335881 CTCTGCAGAAAGAGGTTCAGCGATTGCGACTGGTCAATGTATTGGCCGCGGTCACGAGCC 335822 Query 148092 ATTTCAATGAGTCGCTTTATCTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATA 148148 || || || || ||| || | |||||||| | ||| ||| || | | | Sbjct 335821 ATGTCGATCAG---CTTGCGCTGCGGAATCTCCCACACAGTCCGGTAAAGTTCCCTTAGG 335765 Query 148149 TGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGC 148208 | || || ||||||||||||| | || |||||| | | || || | || ||| Sbjct 335764 TCCTCCGGGATGCCGTCGATGCTGAGGACAGAGCCGTTATAGGAAATGATTTCGTTCCGC 335705 Query 148209 ATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACC 148268 || | || | | || | |||| ||||| || || |||| ||||| ||| Sbjct 335704 ATCTGCTCATTCCACAGCCCACGAGCGATGAGGTCCATGACGAGGTACTTGTTCACGACC 335645 Query 148269 TGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGAC 148328 ||||||||||| ||||| || || | || | ||| |||||| ||||| || || Sbjct 335644 GGAAACTCGCCGCTCAGCACACGGCGGACGTAAATGTTCGACGTAAAGGGTTCGAAGCAC 335585 Query 148329 TCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAG 148388 ||||||||||| | |||||| | || | || || |||||| || || || | ||| Sbjct 335584 TCGTTGTTGCCGAGAATCTGTGAAGTGGACGCGGTTGGCATGGGGGCCACTAGTAATGAG 335525 Query 148389 TTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCG 148446 ||||| | ||| | | | || ||| || |||||||||||| | || | Sbjct 335524 TTGCGTAGGCCGACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGGCCGCTG 335465 Query 148447 A-CGGTGTCACGTTC---CACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCC 148502 |||| | ||||| |||||||| ||||||||||||| ||| || ||||||||| Sbjct 335464 TTCGGTCGCCCGTTCTTCCACATGTCAAACTGCAGAATGCCCTCGCTCGCCGGGCTGCCC 335405 Query 148503 TCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTC-GCCTCGAGCGCGCC 148561 | | | ||||| || | | || ||| || || || | | ||||| ||| | Sbjct 335404 TTAAAGGTCTCATACGGGCCCTCCTCCTTCGCTAGCTC-CATCGATGACTCGACTGCGGC 335346 Query 148562 GTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGCCGCCGACTCGCTTTCGTA 148618 | |||| || |||||| |||| | ||| | | |||| ||| | | | | Sbjct 335345 GAAGTAGATGGTCTCGAAGATTTCCACGTTTAACCTCTGCGCTTCCGCCGAGA---CAAA 335289 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 ||||| ||||| | | || | ||| || |||||||| || || | ||| | ||| || Sbjct 335288 CGGCAGACGCATGAGGATGAAGGTGTCAGCGAGGCCCTGCACCCCAAGGCCGACGGGGCG 335229 Query 148679 GTGTTTAATGTTGGAGAGGCGCGC-GCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCT 148737 || |||||| | ||||||| ||| |||| ||| || | ||||||||| || | Sbjct 335228 GTTGCGCATGTTGCTGCGGCGCGCCGCT-TCGACCGGGTAATAGTTGCGGTCAATAACAC 335170 Query 148738 TGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCA------AAATCGT 148791 || ||||||||| | | |||||| | || || | | || ||| Sbjct 335169 GGTTCAGATTGCGCGTGATCTGCTTTGTCACAGTGTAGAGAAGCTGGTGGTTGAACTCGC 335110 Query 148792 ACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCT 148851 ||| ||| | ||| | | ||| || ||||| || || || || ||||| ||||||| Sbjct 335109 GCTTCTCAACGTCGACGAAGCGGGGCAGCGCGATGGACGCGAGGTTACACACCGCCGTCT 335050 Query 148852 CATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCA 148911 | || || | ||||||| || ||||||| |||||| || ||| |||||| ||| | Sbjct 335049 CCTCTGGCGACGTGTACTCGACAATCTCGGTGCACAGGTTTGAGCACTTGATCGTGCCGA 334990 Query 148912 CGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAG 148971 |||||| || || ||||||||| ||||| ||||||||||| ||| |||| ||||| | Sbjct 334989 GGTTCTTCTGGTTTGACTTGCTGTTACACGCATCCTTGTACAGGATGAACGGCCCGCCTG 334930 Query 148972 TTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTC 149029 | || | ||||| |||| ||| || | | || |||||||| | | || | | Sbjct 334929 TCTCGATCTGCGACTCCAGGATGGCAAACCA--CACCTCCTGCGCCTGAATCGTCTTCAC 334872 Query 149030 GTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATC 149089 | ||| ||||| |||||| || || ||||||||||||||||| ||||| || Sbjct 334871 GCCGCGGCCCTCAGACTCGTAGCGCTCGTAGAGTCGCTCGAACGCCTCGCCATAGCAGTC 334812 Query 149090 GTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCG 149149 | ||| || ||||| ||| ||| ||| |||| |||| || || | | ||| || Sbjct 334811 GCTGAGGCCCGGGCATGTGTTGGGGTCCATCAGCGTCCACTTCCCCTCGCCCTTCACACG 334752 Query 149150 CTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG--CGCCTTGCAGTCT 149207 |||||| |||| ||| || ||||| || ||||| | ||||||||| ||| || ||| Sbjct 334751 CTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTCGCGAGCGCGCTG--GTCA 334694 Query 149208 TCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTGAATATGTCCGCGTGCCACGGCTC 149266 || |||| |||| || | | || || | ||| | || |||||||||||||| Sbjct 334693 TCTTTGCCCGTGTTACGCTTTAAAAGTAAGAACCC-GAAGACATCGGCGTGCCACGGCTC 334635 Query 149267 AATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC---CTGGTCGACGTGGCGCACCAT 149323 || |||||| |||| || ||||||||||| ||||| |||||| |||| ||| | | Sbjct 334634 AAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGT 334575 Query 149324 GTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAAT 149383 |||||| || || || | ||| ||| | | || | | || || || || | || Sbjct 334574 GTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGACGTACCATTGGTCCCGGCGAT 334515 Query 149384 GCGACTGCC-GCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC----GCCGCCGTAC 149438 | ||| || ||| || || | |||||||||| | ||||||||| |||||| ||| Sbjct 334514 GTAACTACCAGCG-GCACGGATGTTGTGCACGTGCAGGCCGATGCCACCGGCCGCCTTAC 334456 Query 149439 TTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTC 149498 | ||| | || || || ||||| ||||||||| |||||||||||| |||| Sbjct 334455 T----GATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCGTCCTTC 334400 Query 149499 ATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTG 149558 | || |||||||||||||| ||||||||| | ||||| || ||| | ||| Sbjct 334399 GACGCCACCAGAAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTC 334340 Query 149559 GGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCC 149618 || |||||||||| || | || ||||| ||||| | ||| ||||| || Sbjct 334339 GGAGTGGCGTGTGTGAAGAAGCCCTTCGACATCAGGTCGTATGTCTCACGCACGTTTTCG 334280 Query 149619 ATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 | || || |||||||| | |||||| ||||| | ||| |||||||| |||||| Sbjct 334279 AGATCCCGACCGTGGATGCCGAGGGCGACACGCATGAACATCTGCTGCGGACGCTCC 334223 >seq27 Length=1026784 Score = 210 bits (232), Expect = 2e-49 Identities = 372/539 (69%), Gaps = 5/539 (1%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||||||||| || ||||| || ||||| || ||||||| || ||| || | | Sbjct 858634 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 858693 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || || || || | ||||||| ||| ||| || || | | | |||||| Sbjct 858694 CATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCACCGAGCGAGATGAGCAG 858753 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||||||| || ||||| ||||||| ||| ||| || ||||||||| | || | Sbjct 858754 TCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCATGCCGATCAGCCG 858813 Query 120531 CACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 |||||||| || || || || ||||| ||| |||| |||||| ||| || || Sbjct 858814 CACCGGCAGCG-CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATGATCT 858872 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAA 120649 | |||| | || ||| | |||||| |||| ||| ||| |||| || || | Sbjct 858873 CCAGCACGCGCTCGCGGGGTAGCTTGTGCCTGATGTGCGAGTTGTACAACAGACATGCGA 858932 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||||||||| ||||| ||||| || ||||||||||| |||||||| || |||| Sbjct 858933 AGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCA 858992 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 | | ||| | |||| | |||| | || || |||||||||||| | ||||| Sbjct 858993 TCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCT 859052 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829 |||| |||||| || | || ||||| || |||| |||| | |||||| Sbjct 859053 CCACCGCGGCAAACGCAATCAGTCGCTCCTGAAAGCTCGC---GCTGCTCCCAATCCACC 859109 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 | |||||||| ||||| || | |||||| ||| || | ||||| ||||||| Sbjct 859110 GTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGCAGC 859168 >seq22 Length=633148 Score = 210 bits (232), Expect = 2e-49 Identities = 372/539 (69%), Gaps = 5/539 (1%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||||||||| || ||||| || ||||| || ||||||| || ||| || | | Sbjct 480066 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 480125 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || || || || | ||||||| ||| ||| || || | | | |||||| Sbjct 480126 CATGAAGTCAAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCACCGAGCGAGATGAGCAG 480185 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||||||| || ||||| ||||||| ||| ||| || ||||||||| | || | Sbjct 480186 TCGGTCCGCCACGAACTCGATGTACTGTGCCATCAACTCCGAGTTCATGCCGATCAGCCG 480245 Query 120531 CACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 |||||||| || || || || ||||| ||| |||| |||||| ||| || || Sbjct 480246 CACCGGCAGCG-CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATGATCT 480304 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAA 120649 | |||| | || ||| | |||||| |||| ||| ||| |||| || || | Sbjct 480305 CCAGCACGCGCTCGCGGGGTAGCTTGTGCCTGATGTGCGAGTTGTACAACAGACATGCGA 480364 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||||||||| ||||| ||||| || ||||||||||| |||||||| || |||| Sbjct 480365 AGTCCGTGTGCAGGCCTTCGTCTCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCA 480424 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 | | ||| | |||| | |||| | || || |||||||||||| | ||||| Sbjct 480425 TCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCCCGAAAAGAAGATGCCCT 480484 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829 |||| |||||| || | || ||||| || |||| |||| | |||||| Sbjct 480485 CCACCGCGGCAAACGCAATCAGTCGCTCCTGAAAGCTCGC---GCTGCTCCCAATCCACC 480541 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 | |||||||| ||||| || | |||||| ||| || | ||||| ||||||| Sbjct 480542 GTACAGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCTGAATCGCGTGCAGCAGC 480600 >seq8 Length=446446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 19954 CACGCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCCCCACGAGTTTTTGATCGTCCAGTA 20013 |||||||||||||||| ||||||| ||| ||||||||||| || ||| |||||| Sbjct 358316 CACGCGCACGTAGCCCCCCTCGCCCCAGTTCTTCCCCCACGAGTTCTTTATCACCCAGTA 358375 Query 20014 CGGCACGTTGTTC--TCGACGCCGTAGCCCACGAGCAGCACCGCGTGGTTCA 20063 ||| || ||| | || | || |||||| ||||||||||| ||||||||| Sbjct 358376 CGGAAC-TTGGCCAATC-ATGCTGTAGCCAACGAGCAGCACACCGTGGTTCA 358425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419283267240