Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq28 295 6e-75 seq27 109 5e-19 seq22 109 5e-19 >seq28 Length=1158465 Score = 295 bits (326), Expect = 6e-75 Identities = 601/873 (69%), Gaps = 35/873 (4%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518 ||||| ||||| || || || || |||||||| || |||| || |||||| || || || Sbjct 335080 GCGATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACG-TGTACTCGACAATCTC 335022 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 || ||||||||| ||| || || || | || | ||| || || | || || Sbjct 335021 GGTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACA 334962 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||| || ||| | || ||| |||| ||||| ||||||| |||| || | ||| ||| Sbjct 334961 CGCATCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAA 334902 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTC 147695 || || |||||||| | | | || | ||||||||| ||||| ||||| Sbjct 334901 CCA---CACCTCCTGCGCCTGAATCGTCTTCACGCCGCGGCCCTCAGACTCGTAGCGCTC 334845 Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGAC 147754 ||| | ||||| ||| | ||||| ||||| ||| ||||| || || || || || | Sbjct 334844 GTAGAGTCGCTCGAACGCCTCGCCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTC 334785 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 |||||||| |||| | | || | || || || ||| |||| ||| || ||||||| Sbjct 334784 -CATCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGGACCCACA 334726 Query 147815 GCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCGGCGCCCATGTTGCG-TTTCAAAT 147871 | ||||| | || ||||| ||| || || || |||| |||| || ||| ||| Sbjct 334725 GAGCGTAGAAGAGGTCGCGAGCGCGCTGG--TCATCTTTGCCCGTGTTACGCTTTAAAAG 334668 Query 147872 TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTAC 147931 |||| || | | ||| ||||||||||| || |||| ||| ||||| | ||||| || | Sbjct 334667 TAAGAACCCGA-AGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGC 334609 Query 147932 GCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTT 147988 |||| ||||| |||||| || | ||| | ||||||| || ||||||| ||| ||| Sbjct 334608 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTA 334549 Query 147989 CCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 |||| ||| ||| || || ||||| ||| | || || ||| || | | || Sbjct 334548 CCAGCCCGTTCGACGTACCATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGT 334489 Query 148049 GCACGTTAACGCCAATGCC----GCCGCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAA 148103 |||||| | ||| ||||| |||||| |||| ||| | |||| || || || Sbjct 334488 GCACGTGCAGGCCGATGCCACCGGCCGCCTTACT--GATCACGGCA---CACTCCTTCAG 334434 Query 148104 TGTCGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACA 148162 || ||||||||||||||||||||||| || |||||| | || ||| ||||| | || Sbjct 334433 CGTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCC-ACCAGAAAGCACGAGCTCA 334375 Query 148163 TTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTT 148220 ||||||| || | || || || ||| ||||| ||| | ||||| || || || | Sbjct 334374 TTTGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGCCCT 334315 Query 148221 TTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAG 148280 | || ||||| | || |||||| ||| ||||| || ||||| ||||| || Sbjct 334314 TCGA--CATCAGGTCGTATGTCTCACGCACGTTTTCGAGATCCCGACCGTGGATGCCGAG 334257 Query 148281 CGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||||| ||||||| ||| ||||| || || || Sbjct 334256 GGCGACACGCATGAACATCTGCTGCGGACGCTC 334224 >seq27 Length=1026784 Score = 109 bits (120), Expect = 5e-19 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 ||| | |||||||| ||||||||||| |||||| | |||||||| |||||||| || ||| Sbjct 858999 GGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCAC 858940 Query 46968 ACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTA-AACTCGGACAC 47026 |||||||| || ||||| | ||||| ||| | | | | || || | || | | Sbjct 858939 ACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC 858880 Query 47027 GATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCG 47084 | | ||| || | ||| ||||||| |||||| ||||| | ||||| ||| Sbjct 858879 G-TGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCG 858823 Query 47085 CTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGT 47143 ||||| || || | || | ||||||||| | ||| ||| | || || ||||| || Sbjct 858822 CTGCCGGTGCGGC-TGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGT 858764 Query 47144 GGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTT 47203 |||||| || ||| | | |||||| | ||| | | || || | || || Sbjct 858763 GGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATT 858704 Query 47204 TGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| || ||| | | || ||||| ||||||| || || || |||||||| Sbjct 858703 TGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 858653 >seq22 Length=633148 Score = 109 bits (120), Expect = 5e-19 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 ||| | |||||||| ||||||||||| |||||| | |||||||| |||||||| || ||| Sbjct 480431 GGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCAC 480372 Query 46968 ACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTA-AACTCGGACAC 47026 |||||||| || ||||| | ||||| ||| | | | | || || | || | | Sbjct 480371 ACGGACTTCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCGCGAGCGC 480312 Query 47027 GATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCG 47084 | | ||| || | ||| ||||||| |||||| ||||| | ||||| ||| Sbjct 480311 G-TGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCG 480255 Query 47085 CTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGT 47143 ||||| || || | || | ||||||||| | ||| ||| | || || ||||| || Sbjct 480254 CTGCCGGTGCGGC-TGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGT 480196 Query 47144 GGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTT 47203 |||||| || ||| | | |||||| | ||| | | || || | || || Sbjct 480195 GGCGGACCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATT 480136 Query 47204 TGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| || ||| | | || ||||| ||||||| || || || |||||||| Sbjct 480135 TGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 480085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609704632360