Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27 251 1e-60 seq22 251 1e-60 seq28 149 9e-30 seq31 104 3e-16 >seq27 Length=1026784 Score = 251 bits (278), Expect = 1e-60 Identities = 418/597 (70%), Gaps = 9/597 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || || ||| ||||| ||||| ||||| |||| || || Sbjct 859536 GAGCCGCTGCAGCAGGAGAATCCGTTCCGCTACGTCCTCTTCCCGATCCAGTATCATGAC 859477 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 859476 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCT 859418 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 |||| ||||| | |||||||| |||||| ||||| ||||| || ||||||||||| Sbjct 859417 CGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 859358 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| |||||| || ||||||| ||| || |||||||| | ||||||||| || |||| Sbjct 859357 CGTGCTCGCC-TTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAACCTCGCGCAGCGCT 859299 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 |||||| || || | |||| ||||| || ||| || ||||||||| | || | Sbjct 859298 TTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGG 859239 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||| ||||| || || |||||| | ||| | ||||| ||| ||| |||| | | Sbjct 859238 AGAACATTCACTCCGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGG 859179 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| || | ||| | |||| | | ||| ||||| || | Sbjct 859178 AGAAGTTGCGGCTGCTGCACGCGATTCAGACGATCCCGTGCATCAAGAAGAAGGCAGAGT 859119 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| | |||||| |||| | ||| |||| ||||| || | | || Sbjct 859118 GGGCTGTACGGTGGAT----TGGGAGCAGCGCGA-GCTTTCAGGAGCGACTGATTGCGTT 859064 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || ||||||||||| || |||||| ||||| || | || ||||| ||||| Sbjct 859063 TGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAA 859004 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||| ||||| ||||| || || | || |||||||| | ||| || ||||||| Sbjct 859003 GCGTGGCCTGATGCCGGGGCTGACG-TTCAGCAACGAGCTCATCTCGCGAGACGAAG 858948 Score = 132 bits (146), Expect = 7e-25 Identities = 190/258 (74%), Gaps = 10/258 (4%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||||| || || || | |||||| ||||| || |||| ||||||||||| Sbjct 858872 AGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGC 858813 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| |||||||||||| | | | ||| |||||||| | | || || || ||||| Sbjct 858812 GGCTGATCGGCATGAAC-TCGGAGTTGATGGCACAGTACATCG-AGTTCGTGGCGGACCG 858755 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTAC--CG-GACGGCCAACCCGTTCCCAT 1456697 |||||| ||||||| || ||||||||||||| || |||| || || || | | Sbjct 858754 ACTGCTCATCTCGCTCGG-TGAGGAGAAGCACTACAACGCGACG--CAGCCATTTGAC-T 858699 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG-CGCCGCGTGGCGAGT 1456756 |||||| |||||||||| |||||||||| ||||| |||||| | | ||||||| Sbjct 858698 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 858639 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||||||||||| Sbjct 858638 ACCAGAAGGCCGGCGTCA 858621 >seq22 Length=633148 Score = 251 bits (278), Expect = 1e-60 Identities = 418/597 (70%), Gaps = 9/597 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || || ||| ||||| ||||| ||||| |||| || || Sbjct 480968 GAGCCGCTGCAGCAGGAGAATCCGTTCCGCTACGTCCTCTTCCCGATCCAGTATCATGAC 480909 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 480908 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCT 480850 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 |||| ||||| | |||||||| |||||| ||||| ||||| || ||||||||||| Sbjct 480849 CGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 480790 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| |||||| || ||||||| ||| || |||||||| | ||||||||| || |||| Sbjct 480789 CGTGCTCGCC-TTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAACCTCGCACAGCGCT 480731 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 |||||| || || | |||| ||||| || ||| || ||||||||| | || | Sbjct 480730 TTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGG 480671 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||| ||||| || || |||||| | ||| | ||||| ||| ||| |||| | | Sbjct 480670 AGAACATTCACTCCGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGG 480611 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| || | ||| | |||| | | ||| ||||| || | Sbjct 480610 AGAAGTTGCGGCTGCTGCACGCGATTCAGACGATCCCGTGCATCAAGAAGAAGGCAGAGT 480551 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| | |||||| |||| | ||| |||| ||||| || | | || Sbjct 480550 GGGCTGTACGGTGGAT----TGGGAGCAGCGCGA-GCTTTCAGGAGCGACTGATTGCGTT 480496 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || ||||||||||| || |||||| ||||| || | || ||||| ||||| Sbjct 480495 TGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAA 480436 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||| ||||| ||||| || || | || |||||||| | ||| || ||||||| Sbjct 480435 GCGTGGCCTGATGCCGGGGCTGACG-TTCAGCAACGAGCTCATCTCGCGAGACGAAG 480380 Score = 132 bits (146), Expect = 7e-25 Identities = 190/258 (74%), Gaps = 10/258 (4%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||||| || || || | |||||| ||||| || |||| ||||||||||| Sbjct 480304 AGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGC 480245 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| |||||||||||| | | | ||| |||||||| | | || || || ||||| Sbjct 480244 GGCTGATCGGCATGAAC-TCGGAGTTGATGGCACAGTACATCG-AGTTCGTGGCGGACCG 480187 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTAC--CG-GACGGCCAACCCGTTCCCAT 1456697 |||||| ||||||| || ||||||||||||| || |||| || || || | | Sbjct 480186 ACTGCTCATCTCGCTCGG-TGAGGAGAAGCACTACAACGCGACG--CAGCCATTTGAC-T 480131 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG-CGCCGCGTGGCGAGT 1456756 |||||| |||||||||| |||||||||| ||||| |||||| | | ||||||| Sbjct 480130 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 480071 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||||||||||| Sbjct 480070 ACCAGAAGGCCGGCGTCA 480053 >seq28 Length=1158465 Score = 149 bits (164), Expect = 9e-30 Identities = 269/391 (69%), Gaps = 17/391 (4%) Strand=Plus/Plus Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852 || ||||| || ||| | ||| |||||||||||||||| ||| || || Sbjct 334221 GTGGAGCGTCCGCAGCAGATGTTCATGCGTGTCGCCCTCGGC----AT-------CCACG 334269 Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTC 259912 |||| | || || |||||| | || ||||| |||||| || || ||| Sbjct 334270 GTCGGGAT----CTCGAAAACGTGCGTGAGACATACGACCTGATGTCGAAGGGCTTCTTC 334325 Query 259913 ACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG-TCGTG 259971 || || || || || ||||| || || ||||| ||| ||||| ||| | ||||| Sbjct 334326 ACACACGCCACTCCGACCCTCTTCAACGCAGGCACCCCGAAGCCGCA-AATGAGCTCGTG 334384 Query 259972 CTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTG 260031 ||||||| ||| ||||| ||| ||||| |||||||| |||||||| ||| |||| Sbjct 334385 CTTTCTGGTGGCGTCGAAGGACGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTG 334444 Query 260032 CGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGC 260091 || | ||| ||||||||||| |||||||| | || ||||| | || ||||| Sbjct 334445 TGCCGTGATCAGTAAGGCGGCCGGTGGCATCGGCCTGCACGTGCACAACATCCGTGCCGC 334504 Query 260092 GGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGT 260151 || ||| | || || ||||| || ||| ||||| || || || ||||| ||||| Sbjct 334505 TGGTAGTTACATCGCCGGGACCAATGGTACGTCGAACGGGCTGGTACCGATGCTGCGCGT 334564 Query 260152 TTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||| |||| || |||||||| |||||| Sbjct 334565 CTTCAACAACACCGCCCGCTACGTGGACCAG 334595 >seq31 Length=625104 Score = 104 bits (114), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1818082 TCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAA 1818141 |||| ||||| |||||||| |||||| || ||| | |||||||| ||||| || | Sbjct 453842 TCACACGCTCCGGAAAGGTCAGCGTCATGGCGACGGAGAACGGCACGCCAACCTCATCGA 453901 Query 1818142 TGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCA 1818201 ||| || | |||||| | ||||||| | |||||| | ||||| ||||||||||||| Sbjct 453902 CGTCGATGTTCGGGTCGCCGGTGATGACCGTGCGCGCCGAAAAGTCTACGCGCTTGCCCA 453961 Query 1818202 TGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGG 1818251 | || ||||| | || ||| | ||| ||||| | |||||| |||| Sbjct 453962 TCAGGTTACCGCGCAGCCGGCCGTACTTACCCTTCAGTCGCTCCGTGAGG 454011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177786990588662