Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28 136 5e-27 seq23 86.0 8e-12 seq24 84.2 3e-11 seq36 82.4 1e-10 seq16 82.4 1e-10 >seq28 Length=1158465 Score = 136 bits (150), Expect = 5e-27 Identities = 554/863 (64%), Gaps = 15/863 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | || || || |||||||| || |||||||| | | Sbjct 335086 GGCAGCGCGATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACGTGTACTCGACA 335027 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| ||||| || | ||||| ||||| ||| || Sbjct 335026 ATCTCGGTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTG 334967 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 || |||||||||||||| || ||| | ||| || ||||| |||| || | || || Sbjct 334966 TTACACGCATCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATG 334907 Query 111410 GCCTTCCAAACATCG-GCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || || ||| ||| ||| | || ||| || ||||| | |||||| Sbjct 334906 GCAAACCACACCTCCTGCGCCTG----AATCGTCTTCACGCCGCGGCCCTCAGACTCGTA 334851 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCT-TG 111523 |||||| || ||| |||| || | || |||| ||| || || || | || Sbjct 334850 GCGCTCGTAGAGTCGCTCGAACGCCTCGCC-ATAGCAGTCGCTGAGGCCCGG-GCATGTG 334793 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || | || | ||| | || | ||| || ||||||||||| | ||||| Sbjct 334792 TTGGGGTCCATCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGGG 334733 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 | |||||| | | ||||| || | | || || || | || ||| | | Sbjct 334732 ACCCACAGAGCGTAGAAGAGGTCGCGAGCGCGCTGGTCATCTTTGCCCGTGTTACGCTTT 334673 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 || | |||| | | || ||| |||||||| |||||||| || || |||| | ||| Sbjct 334672 AAAAGTAAGAACCCGAAGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCC 334613 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || ||| | || | || ||||| || ||| ||| || ||||| ||||| Sbjct 334612 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATC 334553 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 || | | || | || |||||| ||||| || | | ||| | | Sbjct 334552 GGTACCAGCCCGTTCGACGTACCATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATG 334493 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | || | ||||| || || || || ||| ||| ||| ||||||||| | || Sbjct 334492 TTGTGCACGTGCAGGCCGATGCCACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGC 334433 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | ||||| |||| ||| ||| ||||| || | || ||||| | ||| Sbjct 334432 GTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATT 334373 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 ||||| | || || || || ||||||||||| || || ||||| |||| | || | Sbjct 334372 TGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGAAGCCCTTC 334313 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| |||||||||||| || || | || ||||||||||||| ||| Sbjct 334312 GACATCAGGTCGTATGTCTCACGCACGTTTTCGAGATCCCGACCGTGGATGCCGAGGGCG 334253 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || ||||||||||| | ||| || Sbjct 334252 ACACGCATGAACATCTGCTGCGG 334230 >seq23 Length=759779 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 || || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||| Sbjct 225143 AGGTCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAAT 225084 Query 145341 CCAGGTAGGA 145350 || ||||||| Sbjct 225083 CCTGGTAGGA 225074 >seq24 Length=824354 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/82 (83%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 614406 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 614465 Query 145342 CAGGTAGGAG---CTTTACCCA 145360 |||||||||| |||| |||| Sbjct 614466 CAGGTAGGAGTGACTTTTCCCA 614487 >seq36 Length=2618838 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1570214 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1570155 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1570154 CAGGTAGGAG 1570145 >seq16 Length=637797 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 404271 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 404212 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 404211 CAGGTAGGAG 404202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030029549600