Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 250 3e-61 seq22 95.1 1e-14 >seq28 Length=1158465 Score = 250 bits (276), Expect = 3e-61 Identities = 540/781 (69%), Gaps = 40/781 (5%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC--ACGCGTGTCCGTGAGACGT 53249 |||||||| |||||| | || ||||||||| || | | |||| |||||||| | Sbjct 334242 TTCATGCGTGTCGCCCTCGGCATCCACGGTCGGGATCTCGAAAACGTG--CGTGAGACAT 334299 Query 53250 ACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 ||||| | ||| | || | | ||| || |||||||| || ||||| |||||||| || Sbjct 334300 ACGACCTGATGT-CGAAGGGCTTCTTCACACACGCCACTCCGACCCTCTTCAACGCAGGC 334358 Query 53309 ACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 || | || || ||| |||| |||| ||||||||| |||||| ||| ||| Sbjct 334359 ACCCCGAAGCCGCAAATG---AGCTCGTGCTTTCTGGTGGCGTCGAAGGACGACAGCATC 334415 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 |||||||||||||| ||||| |||||||||||| ||| ||| | | ||||| ||| Sbjct 334416 GACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGTAAGGCGGCCGGTGGCATC 334475 Query 53426 GGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--C 53482 || | ||| ||| | ||| ||||||| || | ||| ||||| || || | Sbjct 334476 GGCCTGCACGTGCAC-AACATCCGTGCCGCTGGTAGTTACATCGCCGGGACCAATGGTAC 334534 Query 53483 GTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAAC 53542 |||| | || | || || ||||| ||||||||||||||||| ||||| ||||| || Sbjct 334535 GTCGA--ACGGGCTGGTACCGATGCTGCGCGTCTTCAACAACACCGCCCGCTACGTGGAC 334592 Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 |||||||| || ||||||||||| | |||||| | ||||| ||||||||||||||||| Sbjct 334593 CAGGGTGGCGGTAAGCGCAAGGGTGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGAT 334652 Query 53603 ATTATGGAG---TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 | | | | || || |||| || ||| | || || |||| || Sbjct 334653 GTCTTCGGGTTCTTACTTTTAAAGCGT---AACACGGGCAAAGATGACCAGCGCGCTCGC 334709 Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718 ||||| || ||| ||||||||| | || || | |||||| ||| | ||||| ||| Sbjct 334710 GACCTCTTCTAC-GCTCTGTGGGTCCCAGATTTGTTCATG---AAGCGTGTGAAGGGCGA 334765 Query 53719 GG---AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CTACGGTG 53774 || ||||| |||||| ||| ||| ||||| ||||| ||| | | ||| || | Sbjct 334766 GGGGAAGTGGACGCTGATGGACCCCAACACATGCCCGGGCCT-CAGCGACTGCTATGGCG 334824 Query 53775 AGGAGTT-TAACGAGATGTATCGGACG-TACGCAGT-TCAGGGCCGCTACAAGAAGAAGG 53831 ||| ||| | ||| | || || || |||| ||| | |||||||| | ||||| | Sbjct 334825 AGGCGTTCGAGCGA-CTCTA-CGAGCGCTACG-AGTCTGAGGGCCGCGGCGTGAAGACGA 334881 Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891 | |||||| ||||| ||| ||| ||||| || ||| | ||||| || ||||| Sbjct 334882 TTCAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACAGGCGGGCCGT 334941 Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCA 53951 ||| ||||||||| || ||| ||| |||||||||||| ||||| |||| Sbjct 334942 TCATCCTGTACAAGGATGCGTGTAACAGCAAGTCAAACCAGAAGAACCTCGGCACGATCA 335001 Query 53952 A 53952 | Sbjct 335002 A 335002 Score = 129 bits (142), Expect = 6e-25 Identities = 314/460 (68%), Gaps = 23/460 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 |||||||||||||| | || ||||| || |||||||||||||| || | ||||| | Sbjct 335514 GGCCTACGCAACTCATTACTAGTGGCCCCCATGCCAACCGCGTCCACTTCACAGATTCTC 335573 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596 |||||||||||| ||||| || | ||| | ||||| ||| | ||||| | | ||| Sbjct 335574 GGCAACAACGAGTGCTTCGAACCCTTTACGTCGAACATTTACGTCCGCCGTGTGCTGAGC 335633 Query 55597 AGGTGAGTTT---GTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATC--AAC 55651 || |||||| ||| || |||||| ||||||||| |||||| || | || Sbjct 335634 -GGCGAGTTTCCGGTCGTG---AACAAGTACCTCGTCATGGACCT-CA-TCGCTCGTGGG 335687 Query 55652 AAGTGGAACCCGCAGATCAAGACGGATAT--TGTGC-GGAACGGGGGGTCCGTC--CAGA 55706 |||||| |||||| || || || | | | ||| || || ||| ||| Sbjct 335688 CTGTGGAATGAGCAGATGCGGAACGAAATCATTTCCTATAAC---GGCTCTGTCCTCAGC 335744 Query 55707 ATC-TGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG 55765 ||| | || || | || | ||| |||||||||| |||||||||||||| ||| Sbjct 335745 ATCGACGGCATCCCGGAGGACCTAAGGGAACTTTACCGGACTGTGTGGGAGATTCCGCAG 335804 Query 55766 AAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 | ||||| |||||| | ||| || || ||||| |||||||| || || ||| Sbjct 335805 CGCAAGCTGATCGACATGGCTCGTGACCGCGGCCAATACATTGACCAGTCGCAATCGCTG 335864 Query 55826 AACATCTTCATGGAGAATCCT-TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTG 55884 ||| |||| || ||| ||| | |||||| || | | || |||| ||| ||| | || Sbjct 335865 AACCTCTTTCTGCAGAGCCCTACCTCTGGCC-AGATCACATCTATGCTCTTCTACTGCTG 335923 Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 | || || || |||||||| | ||||| |||| ||| Sbjct 335924 GGAGGCTGGGCTGAAGACGGGCGTCTACTACTTGCGCACC 335963 >seq22 Length=633148 Score = 95.1 bits (104), Expect = 1e-14 Identities = 309/473 (65%), Gaps = 14/473 (3%) Strand=Plus/Plus Query 74799 AACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCA 74858 |||| || || ||||| || ||||||||||||| ||| || | |||||||| || || Sbjct 480409 AACGTCAGCCCCGGCATCAGGCCACGCTTCTTCAGCCAGAACAGCGCACAGAACGAGCCC 480468 Query 74859 CTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-----CGGTG 74913 ||||||||||| || || ||||| || | || || | | || || || Sbjct 480469 GAAAAGAAGATGCCCTCCACCGCGGCAAACGCAATCAGTCGCTCCTGAAAGCTCGCGCTG 480528 Query 74914 CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTA 74972 | || || || | | |||||| || || || |||| ||| |||| || Sbjct 480529 C-TCCCAATCCACCGTAC----AGCCCACTCTGCCTTCTTCTTGAT-GCACGGGATCGTC 480582 Query 74973 TCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATA 75032 | ||||| || | || | |||||| ||| ||| ||| | | |||| | || Sbjct 480583 TGAATCGCGTGCAGCAGCCGCAACTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGC 480642 Query 75033 AGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGC 75092 | ||||||||||| || ||||| ||| | | | |||| || | ||||| | ||| Sbjct 480643 ACCGAGTACGTCTCGGAGTGAATGTTCTCCATCATCAGCTGGAACCCATAGAACGCGCGC 480702 Query 75093 GCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGT-CGATATTCTCCATGACGATGCC 75151 ||||| | | || ||| || | ||| | ||| ||| ||||| | ||||||||| Sbjct 480703 GCCTCCGGCACCTTTACGTCGCTCATAAAGCGC-TGTGCGAGGTTCTCGACGACGATGCC 480761 Query 75152 GTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 ||| | ||||||| || || || || ||||| ||||| ||||| |||| | || Sbjct 480762 GTCACTGCCGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAG 480821 Query 75212 TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 |||| ||||||| ||| | | || |||||||| |||||||||| Sbjct 480822 CGCCACCCAGTCCTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCCAGA 480874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214283109800