Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28 156 5e-33 seq27 114 1e-20 seq22 114 1e-20 seq36 93.3 5e-14 >seq28 Length=1158465 Score = 156 bits (172), Expect = 5e-33 Identities = 788/1231 (64%), Gaps = 35/1231 (3%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||| ||||| |||||||| |||||| ||| || ||||| ||||| Sbjct 335447 CCACATGTCAAACTGCAGAATGCCCTCGCTCGCCGGGCTGCCCTTAAAGGTCTCATACGG 335388 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| ||| || ||||| ||| | | || ||| || ||| ||| || Sbjct 335387 GCCCTCCTCCTTCGCTAGCTCCATCGATGACTCGACTGCGGCGAAGTAGATGGTCTCGAA 335328 Query 80661 GACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 || || ||| | ||| | |||| | | | | |||| || | ||| | |||| Sbjct 335327 GATTTCCACGTTTA-ACCTCTGCGCTTCCGCCGAGACAAACGGCAGACGCATGAGGATGA 335269 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-C 80778 | |||||| |||||||| || || | | ||| ||||||| |||| |||| || | Sbjct 335268 AGGTGTCAGCGAGGCCCTGCACCCCAAGGCCGACGGGGCGGTTGCGCATGTTGCTGCGGC 335209 Query 80779 TCGGC-CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 || | || || | |||||| |||| || || || |||||||| ||||| || | Sbjct 335208 GCGCCGCTTCG--ACCGGGTAATAGTTGCGGTCAATAACACGGTTCAGATTGCGCGTGAT 335151 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG---TTCCC--CTTC-ACAAA 80891 | ||| ||| | || ||| || ||| | | ||| | | || || || Sbjct 335150 CTGCTTTGTCACAGTGTAGAGAAGCTGGTGGTTGAACTCGCGCTTCTCAACGTCGACGAA 335091 Query 80892 TGCCGGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACT 80950 || || || | | |||||| || || ||||| ||| ||| || | || ||| Sbjct 335090 -GCGGGGCAGCGCGATGGACGCGAGGTTACACACCGCCGTCTCCTCTGGCGACGTGTACT 335032 Query 80951 CGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACT 81010 |||| || || ||||||| || || |||| || || || ||||| ||||||||||||| Sbjct 335031 CGACAATCTCGGTGCACAGGTTTGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTTGACT 334972 Query 81011 TGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGA 81070 || ||| || || |||||||| ||| |||| || ||||||| ||| |||| | Sbjct 334971 TGCTGTTACACGCATCCTTGTACAGGATGAACGGCCCGCCTGTCTCGATCTGCGACTCCA 334912 Query 81071 GGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACAT 81130 ||||||| ||| | ||| |||||| | | ||| | ||| || | | | | Sbjct 334911 GGATGGCAAACCACACCTCCTGCGCCTGAATCGTCTTCACGCCGCGGCCCTCAGACTCGT 334852 Query 81131 ACTTGGCGTAAGCTTCG-TCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTC 81188 | ||| || ||| |||||| | || | | || || ||||| | ||||| Sbjct 334851 AGCGCTCGT-AGAGTCGCTCGAACGCCTCGCCATAGCAG-TCGCTGAGGCCCGGGCATGT 334794 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||| ||| |||||| ||| | ||| || ||| ||||||||| || || Sbjct 334793 GTTGGGGTCCATCAGCGTCCACTTCCCCTCGCCCTTCACACGCTTCATGAACAAATCTGG 334734 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGC--CTCCTCATCACCCTGGTTGAGG 81306 || ||| || ||| ||| |||||||| ||||||| || || | ||| ||| | Sbjct 334733 GACCCACAGAGCGTAGAAGAGGTCGCG--AGCGCGCTGGTCATCTTTGCCCGTGTTACGC 334676 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | || | | || || || ||||| ||||| || |||||||||| | Sbjct 334675 TTTAAAAGTAAGAACCCGAAGACATCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCA 334616 Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 |||||||| || ||||||||||| ||||| ||||| || ||| || || |||| | Sbjct 334615 CCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGC 334556 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC--CCCTTGGCGC 81481 || || | | || | ||| ||| || || || |||| | || || ||| | Sbjct 334555 ATCGGTACCAGCCCGTTCGACGTACCATTGGTCCCGGCGAT--GTAACTACCAGCGGCAC 334498 Query 81482 GCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541 | | ||| | || ||||||||||| | | ||| ||| |||||| | Sbjct 334497 GGATGTTGTGCACGTGCAGGCCGATGCCACCGGCCGCCTTACTGATCACGGCACACTCCT 334438 Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGC 81598 ||| || || || || || |||||||| || | ||| | | || || ||| | ||| Sbjct 334437 TCAGCGTGTCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGAAAGCACGAGC 334378 Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658 | ||| || || | | ||| || ||||| || || || || ||||| |||| Sbjct 334377 T---CATTTGCGGCTTCGGGGTGCCTGCGTTGAAGAGGGTCGGAGTGGCGTGTGTGAAGA 334321 Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 | | || ||||||||||| || || || ||| | | ||| |||||| || | Sbjct 334320 AGCCCTTCGACATCAGGTCGTATGTCTCACGCACGTTTTCGAGATCCCGACCGTGGATGC 334261 Query 81719 CGATAGCTACACGCATAAACATGTACTgggg 81749 ||| || |||||||| ||||| | ||| || Sbjct 334260 CGAGGGCGACACGCATGAACATCTGCTGCGG 334230 >seq27 Length=1026784 Score = 114 bits (126), Expect = 1e-20 Identities = 520/814 (64%), Gaps = 19/814 (2%) Strand=Plus/Minus Query 64352 TCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACT 64411 |||||||||| |||||| | || |||| ||| || | | ||||||| || ||| Sbjct 859442 TCTGGACGGTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGCTGAACG 859383 Query 64412 CACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTG 64471 ||| | ||||||||||||| || || || |||||||| |||||||| || | Sbjct 859382 ACGGGGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCG 859323 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | | ||||| | | | |||| | || || || | || |||||||| | | Sbjct 859322 TCGTCGAGAACCTCGCGCAGCGCTTTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGT 859263 Query 64532 TCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 |||||| || ||| | | || | ||||| ||||||||| ||| | || | | Sbjct 859262 TCTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTGCTGG 859203 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 ||| || | ||| | |||||| | ||| | || || |||| | | Sbjct 859202 ACACGTACATCACGGACAGCGAGGAGAAGTTGCGGCTGCTGCACGCGATTCAGACGAT-C 859144 Query 64652 CCGCTG--TTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTT 64709 ||| || | | || ||||| || ||||| | |||||||| | | || || Sbjct 859143 CCG-TGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGCAGCGCGAGCTT 859085 Query 64710 TGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTG 64769 | |||| || || |||||| ||||| || || |||||||| || || ||||| Sbjct 859084 TCAGGAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTG 859025 Query 64770 TTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCT 64829 | | | |||||||| || ||||| ||||||||||| || ||| |||| |||||||| Sbjct 859024 TGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCT 858965 Query 64830 GATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGC---CACCT 64886 ||||| || ||||| || || ||| || || || | ||| || | ||| | Sbjct 858964 CATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAACTCGCACAT 858905 Query 64887 CAAGGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGA 64946 || | |||| | | | | | | | | || || | || || | || || Sbjct 858904 CAGGCACAAGCTACCCCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGA 858845 Query 64947 AAAGGAATTCATTACTGC--CGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAG 65004 || ||||| |||| |||||| ||| || || ||||||||| | | || | Sbjct 858844 GCGCGAGTTCAT--CTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTG 858787 Query 65005 ATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTA-CTCAGTTTGGT---ATTAA 65060 ||| |||||| ||||| || || || || || ||||| | ||| | | ||| || Sbjct 858786 ATGGCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTC-GCTCGGTGAGGAGAA 858728 Query 65061 GCCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAA 65120 || |||| || | | | |||||||||| ||||||| |||| ||| |||| || Sbjct 858727 GCACTAC---AACGCGACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAA 858671 Query 65121 GACTAACTTTTTTGAAAAGAGGGTAGGTGATTAC 65154 ||| ||||| || || |||| ||| || || ||| Sbjct 858670 GACGAACTTCTTCGAGAAGAAGGTGGGCGAGTAC 858637 >seq22 Length=633148 Score = 114 bits (126), Expect = 1e-20 Identities = 520/814 (64%), Gaps = 19/814 (2%) Strand=Plus/Minus Query 64352 TCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACT 64411 |||||||||| |||||| | || |||| ||| || | | ||||||| || ||| Sbjct 480874 TCTGGACGGTGGAGGAGATCGACCTCGGCAACGACATGAAGGACTGGGTGGCGCTGAACG 480815 Query 64412 CACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTG 64471 ||| | ||||||||||||| || || || |||||||| |||||||| || | Sbjct 480814 ACGGGGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGTGACGGCATCG 480755 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | | ||||| | | | |||| | || || || | || |||||||| | | Sbjct 480754 TCGTCGAGAACCTCGCACAGCGCTTTATGAGCGACGTAAAGGTGCCGGAGGCGCGCGCGT 480695 Query 64532 TCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 |||||| || ||| | | || | ||||| ||||||||| ||| | || | | Sbjct 480694 TCTATGGGTTCCAGCTGATGATGGAGAACATTCACTCCGAGACGTACTCGGTGCTGCTGG 480635 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 ||| || | ||| | |||||| | ||| | || || |||| | | Sbjct 480634 ACACGTACATCACGGACAGCGAGGAGAAGTTGCGGCTGCTGCACGCGATTCAGACGAT-C 480576 Query 64652 CCGCTG--TTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTT 64709 ||| || | | || ||||| || ||||| | |||||||| | | || || Sbjct 480575 CCG-TGCATCAAGAAGAAGGCAGAGTGGGCTGTACGGTGGATTGGGAGCAGCGCGAGCTT 480517 Query 64710 TGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTG 64769 | |||| || || |||||| ||||| || || |||||||| || || ||||| Sbjct 480516 TCAGGAGCGACTGATTGCGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCGTTCTG 480457 Query 64770 TTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCT 64829 | | | |||||||| || ||||| ||||||||||| || ||| |||| |||||||| Sbjct 480456 TGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAACGAGCT 480397 Query 64830 GATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGC---CACCT 64886 ||||| || ||||| || || ||| || || || | ||| || | ||| | Sbjct 480396 CATCTCGCGAGACGAAGGCCTGCACACGGACTTCGCATGTCTGTTGTACAACTCGCACAT 480337 Query 64887 CAAGGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGA 64946 || | |||| | | | | | | | | || || | || || | || || Sbjct 480336 CAGGCACAAGCTACCCCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGA 480277 Query 64947 AAAGGAATTCATTACTGC--CGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAG 65004 || ||||| |||| |||||| ||| || || ||||||||| | | || | Sbjct 480276 GCGCGAGTTCAT--CTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACTCGGAGTTG 480219 Query 65005 ATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTA-CTCAGTTTGGT---ATTAA 65060 ||| |||||| ||||| || || || || || ||||| | ||| | | ||| || Sbjct 480218 ATGGCACAGTACATCGAGTTCGTGGCGGACCGACTGCTCATCTC-GCTCGGTGAGGAGAA 480160 Query 65061 GCCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAA 65120 || |||| || | | | |||||||||| ||||||| |||| ||| |||| || Sbjct 480159 GCACTAC---AACGCGACGCAGCCATTTGACTTCATGGAGATGATCTCGCTGCAGGGCAA 480103 Query 65121 GACTAACTTTTTTGAAAAGAGGGTAGGTGATTAC 65154 ||| ||||| || || |||| ||| || || ||| Sbjct 480102 GACGAACTTCTTCGAGAAGAAGGTGGGCGAGTAC 480069 >seq36 Length=2618838 Score = 93.3 bits (102), Expect = 5e-14 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 |||||||||||||| || || ||||| || ||||| || ||||| | || || || || Sbjct 1341397 CCAGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCG 1341338 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 ||||| || |||| ||||| ||||| || ||||| || |||| || |||||||| ||| Sbjct 1341337 GACTACAACATCCAGAAGGAGTCCACGCTGCATCTGGTGCTGCGCCTGCGCGGTGG-CAA 1341279 Query 27637 G 27637 | Sbjct 1341278 G 1341278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 1341613 AATGCAGATCTTTGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAG 1341554 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 || | || | || ||||||| || || |||||||||||||| || || || Sbjct 1341553 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCC 1341500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308610651120