Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=495072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 378/592 (64%), Gaps = 28/592 (5%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || || || || || || | |||| |||||| ||||||||||||||||||| Sbjct 356679 CCGCTCCTTACAACAAAGCGCGTCTTCTGGCGCGGCGTGTGCGAGGAGCTGCTGTGGTTC 356738 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | || | |||||| | || ||| || ||| | | || ||||||| Sbjct 356739 CTGCGCGGCGAGACGAACGCGCAGCTGCTGGCGGATAAGGGCATTCATATTTGGGACGGC 356798 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGG----AGGAGGGCGA 34398 |||| || || || ||||| |||| || ||| | | || | | ||| || Sbjct 356799 AACGGCTCGCGCGAGTTTCTTGACAGCCGTGGGCTGAC----CGAGAATAAAGAGATGGA 356854 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | | ||||| |||||||| ||||||||| | ||||| || || ||||| | || || Sbjct 356855 CCTCGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTCGGTGCAGAGTACAGAGGTTATGA 356914 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC---GACACCTTGAA 34515 || ||||| || |||| | ||||||| | | || |||| ||||| | Sbjct 356915 CGCAAACTATGACGGCGAGGGGGTGGACCAGATCC---GCGCGATCGTAGACACAATCCG 356971 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 |||||| || || | | || | | ||| ||||||||| | || Sbjct 356972 TTTGAACCCGGACGATCGGCGCCTCCTCTTTACCGCCTGGAACCCGCGCGCCCTGAAAGA 357031 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---------CGCGAATG 34625 |||||| || || ||||||||| || ||| || ||||| || ||||| Sbjct 357032 GATGGCACTGCCGCCGTGCCACTTACT-TGCTCAGTTCTATGTGAACTCAGAGGCGAA-- 357088 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 |||| |||||||| | | || || || ||| | || ||||| | || || || |||| Sbjct 357089 -GGAGTTGTCCTGCATGGTGTACCAGCGCTCGTGCGATATGGGACTCGGCGTTCCCTTCA 357147 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 || | || ||||| || ||||| | | || || | | || ||| |||| Sbjct 357148 ACGTCGCCTCCTACGCGCTACTCACCATCCTCATGGCGAAGGCGACAGGCTTGCGGCCTG 357207 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | ||||| ||||| || | || || || ||| | |||| |||||| |||| Sbjct 357208 GTGAGCTTGTGCACACCCTCGGCGACGCCCATGTGTACCGCAACCACGTCGA 357259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 378/592 (64%), Gaps = 28/592 (5%) Strand=Plus/Minus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 |||| |||||| |||| | ||| || || || | || ||||| ||||| ||||| | Sbjct 357259 TCGACGTGGTTGCGGTACACATGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGC 357200 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 || || | | || || | | ||||| || ||||| || | |||||| || Sbjct 357199 AAGCCTGTCGCCTTCGCCATGAGGATGGTGAGTAGCGCGTAGGAGGCGACGTTGAAGGGA 357140 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG 6727 || || | ||||| || | ||| || || || | | |||||||| |||| ||||| Sbjct 357139 ACGCCGAGTCCCATATCGCACGAGCGCTGGTACACCATGCAGGACAACTCC---TTCGCC 357083 Query 6728 ---------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAG 6777 || ||||| || ||| || ||||||||| || || |||||| || Sbjct 357082 TCTGAGTTCACATAGAACTGAGCA-AGTAAGTGGCACGGCGGCAGTGCCATCTCTTTCAG 357024 Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGT 6837 | ||||||||| ||| | | || | | || || |||||| | || Sbjct 357023 GGCGCGCGGGTTCCAGGCGGTAAAGAGGAGGCGCCGATCGTCCGGGTTCAAACGGATTGT 356964 Query 6838 GTC---GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCC 6894 ||| |||| || | | ||||||| | |||| || ||||| || || || Sbjct 356963 GTCTACGATCGCGC---GGATCTGGTCCACCCCCTCGCCGTCATAGTTTGCGTCATAACC 356907 Query 6895 CCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954 | ||||| || || ||||| | ||||||||| |||||||| ||||| | ||| ||| Sbjct 356906 TCTGTACTCTGCACCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTC 356847 Query 6955 CT----CCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCC 7010 | | || | | ||| || |||| ||||| || || || |||| |||||| Sbjct 356846 TTTATTCTCG----GTCAGCCCACGGCTGTCAAGAAACTCGCGCGAGCCGTTGCCGTCCC 356791 Query 7011 AGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACA 7070 | || | | ||| || ||| || | |||||| | || | || |||||||| Sbjct 356790 AAATATGAATGCCCTTATCCGCCAGCAGCTGCGCGTTCGTCTCGCCGCGCAGGAACCACA 356731 Query 7071 GCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||||||||||| |||||| |||| | || || || || || || ||||| Sbjct 356730 GCAGCTCCTCGCACACGCCGCGCCAGAAGACGCGCTTTGTTGTAAGGAGCGG 356679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260993576720