Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq33 423 2e-113 seq72 414 1e-110 seq14 156 4e-33 seq4 156 4e-33 seq12 152 5e-32 seq69 86.0 6e-12 >seq33 Length=364854 Score = 423 bits (468), Expect = 2e-113 Identities = 623/863 (72%), Gaps = 18/863 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | ||||| || || |||| ||| Sbjct 191039 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 190980 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 190979 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 190920 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 190919 GGCAACGACATGAAGGACTGGGCAACGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 190861 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 190860 TGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 190801 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 190800 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 190742 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | | ||| Sbjct 190741 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGC-GAG 190683 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| || ||||||| |||||| || | ||||||| ||| Sbjct 190682 GAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAG 190623 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | ||| Sbjct 190622 TGGGCCGTGCGGTGGATCGGGAGCAGCGCG--AGCTTTCAG-GAGCGGCTGATCGGCTTT 190566 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| | |||||||| || ||| ||| | || ||||| ||||| Sbjct 190565 GCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 190506 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | ||||||||||| Sbjct 190505 CGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTA 190446 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || || |||||| ||| ||| | ||| | | | |||| | Sbjct 190445 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGA 190387 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| |||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 190386 GCGCGTGCTGGAGATTATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 190328 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 190327 CGCTGCCGGTGCGGCTGATTGGCATGAA-CGCGGAGCTGATGGCGCAGTACATCGAGTTC 190269 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| || || | | ||| Sbjct 190268 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCG 190209 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | || || ||| | | ||||| Sbjct 190208 TTCGAATTCATGGAGATGATCTC 190186 >seq72 Length=122406 Score = 414 bits (458), Expect = 1e-110 Identities = 621/863 (72%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | ||||| || || |||| ||| Sbjct 112300 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 112359 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | ||||| Sbjct 112360 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTA 112419 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 112420 GGCAACGACATGAAGGACTGGGCAACGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 112478 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 112479 TGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 112538 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 112539 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 112597 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | | | | ||| Sbjct 112598 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACAGACAGC-GAG 112656 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| || ||||||| |||||| || | ||||||| ||| Sbjct 112657 GAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAG 112716 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | ||| Sbjct 112717 TGGGCCGTGCGGTGGATCGGGAGCAGCGCG--AGCTTTCAG-GAGCGGCTGATCGGCTTT 112773 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| | |||||||| || ||| ||| | || ||||| ||||| Sbjct 112774 GCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 112833 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | ||||||||||| Sbjct 112834 CGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTA 112893 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || || |||||| ||| ||| | ||| | | | |||| | Sbjct 112894 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGA 112952 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| |||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 112953 GCGCGTGCTGGAGATTATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 113011 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 113012 CGCTGCCGGTGCGGCTGATTGGCATGAA-CGCGGAGCTGATGGCGCAGTACATCGAGTTC 113070 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| || || | | || Sbjct 113071 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCA 113130 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 113131 TTCGACTTCATGGAGATGATCTC 113153 >seq14 Length=517377 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 230697 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 230756 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 230757 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 230815 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 230816 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 230875 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||||||||| || ||| ||||| || | ||||||| Sbjct 230876 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 230925 >seq4 Length=1102922 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| || ||| | | || || || | | Sbjct 384508 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 384449 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| | |||| || || | ||||| ||||||||||| |||||| Sbjct 384448 CGACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 384390 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 384389 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 384330 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 384329 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 384280 >seq12 Length=572832 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 485140 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 485199 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||||||||| |||||||| Sbjct 485200 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 485259 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 485260 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 485319 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||| |||||||||| || ||| ||||| || | ||||||| Sbjct 485320 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 485368 >seq69 Length=136113 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAG-TGCCCTACTGGGT 73639 || ||||||| ||||||||| || || |||| | | || ||| | || |||||||| Sbjct 76049 CTGAACCACGGCGTGCTGCTCGTTGGGTACGACAT-GACTGGTGAGGTTCCGTACTGGGT 75991 Query 73640 GTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 | |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 75990 GATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGCTACGTGCGCGT 75940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217036079360