Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33 150 3e-31 seq72 141 1e-28 seq2 132 7e-26 >seq33 Length=364854 Score = 150 bits (166), Expect = 3e-31 Identities = 577/887 (65%), Gaps = 32/887 (4%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 191004 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 190945 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 190944 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGC---TGAA 190888 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || ||| | | |||||||| |||||| ||| || || Sbjct 190887 CGACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 190828 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 190827 AGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCG 190769 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 190768 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 190709 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| | || | || | | || | ||| | |||| || | ||| Sbjct 190708 TGGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACG 190650 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | || ||||| | |||| | |||||||||| | | | || Sbjct 190649 ATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGC 190590 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | || ||||| || |||||||| |||||||| |||| Sbjct 190589 TTTCAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGT 190535 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 190534 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGC 190476 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||||| | || || || |||||||| |||||| ||||| | ||| | ||| | | Sbjct 190475 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCG-CATGC--CTGCTGTAC 190419 Query 125589 AACTATCTGCGTCCCGAGTGC-AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 |||| || | || | || | | ||| || || | | ||| | || Sbjct 190418 AACT---CGCACATCAAGCACAAGCTGCCGCG-CGAGCGCGTGCTGGAGATTATCGTGGA 190363 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 ||| |||| || || | ||||| | ||| | || ||||| | |||||||||| Sbjct 190362 TGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCAT 190303 Query 125708 GAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 |||| |||| ||| ||| ||||||| ||||| || || || || || ||| | || Sbjct 190302 GAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTG---GTGT 190247 Query 125767 TGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | ||| ||| ||| || | | | | || || || |||||| | || | Sbjct 190246 CGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGAATTCATGGAGATGATCT 190187 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| || || ||||| ||||||| |||||| | |||||| Sbjct 190186 CGCTGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGTAC 190140 >seq72 Length=122406 Score = 141 bits (156), Expect = 1e-28 Identities = 575/887 (65%), Gaps = 32/887 (4%) Strand=Plus/Plus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 112335 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 112394 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| || ||| ||| || | || |||| || | ||| Sbjct 112395 CTGGACGGTGGAGGAGATCGACCTAGGCAACGACATGAAGGACTGGGCAACGC---TGAA 112451 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || ||| | | |||||||| |||||| ||| || || Sbjct 112452 CGACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 112511 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 112512 AGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCG 112570 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 112571 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 112630 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| || | || | | || | ||| | |||| || | ||| Sbjct 112631 TGGACACGTACATCACAGA-CAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACG 112689 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | || ||||| | |||| | |||||||||| | | | || Sbjct 112690 ATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGC 112749 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | || ||||| || |||||||| |||||||| |||| Sbjct 112750 TTTCAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGT 112804 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 112805 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGC 112863 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||||| | || || || |||||||| |||||| ||||| | ||| | ||| | | Sbjct 112864 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCG-CATGC--CTGCTGTAC 112920 Query 125589 AACTATCTGCGTCCCGAGTGC-AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 |||| || | || | || | | ||| || || | | ||| | || Sbjct 112921 AACT---CGCACATCAAGCACAAGCTGCCGCG-CGAGCGCGTGCTGGAGATTATCGTGGA 112976 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 ||| |||| || || | ||||| | ||| | || ||||| | |||||||||| Sbjct 112977 TGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCAT 113036 Query 125708 GAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 |||| |||| ||| ||| ||||||| ||||| || || || || || ||| | || Sbjct 113037 GAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTG---GTGT 113092 Query 125767 TGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | ||| ||| ||| || | | | | || || || |||||| | || | Sbjct 113093 CGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCATTCGACTTCATGGAGATGATCT 113152 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| || || ||||| |||||||||| ||| | |||||| Sbjct 113153 CTCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGTAC 113199 >seq2 Length=1084633 Score = 132 bits (146), Expect = 7e-26 Identities = 319/476 (67%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||| ||| || ||||| | |||||||| | || || |||||||| ||| Sbjct 752881 CAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACGCCGAC 752822 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 || |||| |||| | | ||| ||| ||| | || || || || ||| | Sbjct 752821 GTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGC 752765 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || ||||| || ||| | |||||| |||| |||| ||| || || || || Sbjct 752764 GACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGGGG 752705 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| ||| || ||| || || || |||||||| || || ||| Sbjct 752704 AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAGGAG 752645 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATGC 97171 |||||| ||| | ||||||| |||||||| ||| | ||||| || | || Sbjct 752644 TTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGA-TCCAGGC 752586 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | || ||||| |||||| || | | ||| | ||||| || |||| ||| || Sbjct 752585 CCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCATCCT 752526 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || |||| ||||| | | ||| ||||| |||||| ||| Sbjct 752525 CTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTT-GGCACGATCAAGTGCT 752467 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | || || |||||||| ||||| |||||| | || ||| | |||||||| || ||| Sbjct 752466 CGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGC 752411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056087551360