Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 seq14 107 2e-18 seq12 107 2e-18 seq4 104 2e-17 >seq2 Length=1084633 Score = 136 bits (150), Expect = 4e-27 Identities = 567/878 (65%), Gaps = 45/878 (5%) Strand=Plus/Plus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTC 146693 ||||| ||||| | ||| || || || ||||| | | | || |||| |||||||| Sbjct 752394 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTG-TACTCGACAATCTC 752452 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTGTTG 146751 | ||| ||||| ||||||||| |||| | ||| || ||||| ||| ||||| Sbjct 752453 CGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGC--TGTTG 752510 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAAT 146811 || | |||||||||||| ||| |||| || || || |||| | | ||| | |||| Sbjct 752511 CATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGG-- 752568 Query 146812 CTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATTCTTTTCGTATTTCT 146869 | || || | ||| ||| | | | ||||| || | | ||||| || Sbjct 752569 CAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCT 752628 Query 146870 CGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGAC 146929 |||| | ||||| ||| || ||| |||||| || || | |||||| Sbjct 752629 CGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGAT 752688 Query 146930 AGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACAAATCGGGAATCCAA 146988 | ||||| ||| | | || | || ||| || |||||||| ||| || ||||| Sbjct 752689 CCATCAGCGTCCACT-TCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCAC 752747 Query 146989 AG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTT 147047 || || || | | |||||| || ||| || ||| |||||||| ||| | Sbjct 752748 AGCGCATAGAAG-AGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCA-GCA 752805 Query 147048 GAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTC 147106 | || | | || | || | ||||| ||||| | || |||| | ||||| || | Sbjct 752806 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 752865 Query 147107 GCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACA 147163 |||||||||| ||| || |||| ||| | |||| |||||||| |||| ||| | || Sbjct 752866 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCA 752925 Query 147164 CGAGGCCGCCGGATTTTGTGGTGCCGTTG--------TATTGAGC----------GCTGA 147205 |||| ||| || | |||||||| ||| ||| || || Sbjct 752926 CGAGCCCG------TTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGA 752979 Query 147206 CGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCA 147265 | | |||||| ||| || | || ||| || || |||| ||| |||| | || Sbjct 752980 TGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCA 753039 Query 147266 AGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAACAC 147324 ||| | ||||||||||||||||||||||||||| || || |||||| ||||| | | Sbjct 753040 GGGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGC-CACCAGGAAGCACGAGCTC 753098 Query 147325 ATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCC 147384 ||||| || ||||| || ||| || || ||| ||||||| ||||| |||| Sbjct 753099 ATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCC 753158 Query 147385 AGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGG 147444 ||| | | ||||| ||| || || | | || ||||||||||| | || Sbjct 753159 TTCGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGA 753218 Query 147445 GCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAAT 147482 ||||| ||||||| ||| ||||| || || ||| |||| Sbjct 753219 GCGACACGCATGAACATCTGCTGTGGACGCTCCACAAT 753256 >seq14 Length=517377 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 230923 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 230864 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 230863 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 230804 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 230803 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 230744 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 230743 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 230695 >seq12 Length=572832 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 485366 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 485307 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 485306 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 485247 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 485246 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACC 485187 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 485186 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 485138 >seq4 Length=1102922 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 384281 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 384340 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 384341 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 384400 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 384401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 384460 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | | | ||| ||||||||||| || || || || |||||||| Sbjct 384461 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 384507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498802896640