Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 194 2e-43 seq33 161 1e-33 seq72 152 6e-31 seq12 102 1e-15 seq67 100 3e-15 >seq2 Length=1084633 Score = 194 bits (214), Expect = 2e-43 Identities = 223/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| || Sbjct 752879 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGA 752938 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| || || || | |||| ||| || ||||| | |||||| || | ||| Sbjct 752939 CGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCC 752998 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||||||||||| ||| ||| | |||||||| || || |||||||||||||| || Sbjct 752999 AATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGGGTGTCGTAGATGCCGTC 753058 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| ||||| |||| || |||||||| ||||||| | || ||||| Sbjct 753059 GATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 753118 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||| ||||| || || || || |||||| || | ||||||| |||||| || Sbjct 753119 GGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTCGACATGAGGTCGTACGT 753178 Score = 105 bits (116), Expect = 8e-17 Identities = 317/493 (64%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 1628110 GGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACG 1628169 ||||| || | | || |||||||| |||| ||| ||||||| ||| ||| Sbjct 752388 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 752447 Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGG 1628229 ||||| ||||| ||||| | || | |||| || || |||| |||||| | | | Sbjct 752448 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 752507 Query 1628230 TTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATG 1628289 ||| |||||||||| ||| ||| | ||| |||| ||||||||||||| | | | |||| Sbjct 752508 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 752567 Query 1628290 GCCGACCAGATCTGGCGCG-CGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNNN 1628348 || |||| | || | | | || || | ||| ||||||||| Sbjct 752568 GCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCG 752626 Query 1628349 NNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCG-TGCAGGCCGGGCGCCTCGGACG 1628407 ||||| || | || ||||| ||| || | |||||| | | | | Sbjct 752627 CTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGT-GTTGG 752685 Query 1628408 GACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCC 1628467 || | |||| ||| | || || | | | || | |||||| || || ||| Sbjct 752686 GATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCC 752745 Query 1628468 ACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGT 1628527 |||| || || ||||||||||| || || | || || || || ||| ||| || Sbjct 752746 ACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCA 752805 Query 1628528 CGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 1628587 || || | | | |||||||||||| ||||| || ||| ||||||||||||||||| Sbjct 752806 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 752865 Query 1628588 GCTTGCCGCCGCC 1628600 |||| ||||| || Sbjct 752866 GCTTACCGCCACC 752878 Score = 91.5 bits (100), Expect = 2e-12 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||| ||||| ||||||||||||| ||| || || |||| ||||| ||| | |||| | Sbjct 752209 CGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCG 752268 Query 1627928 CC-TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGC 1627975 || || | |||||||||| |||| ||| || |||||||||||||||| Sbjct 752269 CCGTCTCG-ACCGGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGC 752316 >seq33 Length=364854 Score = 161 bits (178), Expect = 1e-33 Identities = 223/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| || |||||| ||||| || ||||||| ||||||||| Sbjct 190132 GCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATC 190191 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || | ||||||||| || ||||||||| | Sbjct 190192 ATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACC 190251 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 190252 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 190311 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || ||||| Sbjct 190312 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATA 190371 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 190372 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 190430 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 190431 TGCGAAGTC 190439 Score = 145 bits (160), Expect = 9e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 190727 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 190786 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 190787 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 190846 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 190847 AGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 190906 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 190907 TCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 190966 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 190967 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAACGGGTTCTC 191024 Score = 105 bits (116), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||||| || | || || ||||| || |||||||| Sbjct 190449 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 190508 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || | |||||||| || || || || |||||||| || |||||||| Sbjct 190509 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 190568 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||||| |||||||| |||| ||| | |||| ||||||| || ||||| Sbjct 190569 GCCGATCAGCCGCTCCTGAAAG--CTCGCGCTGCTCC----CGATCCACCGCACGGCCCA 190622 Query 869359 GTCGGCCTTTTTC 869371 || ||||| ||| Sbjct 190623 CTCCGCCTTCTTC 190635 >seq72 Length=122406 Score = 152 bits (168), Expect = 6e-31 Identities = 221/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | | |||||| ||||| || ||||||| || |||||| Sbjct 113207 GCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGAGAGATC 113148 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | ||| || | | || | ||||||||| || ||||||||| | Sbjct 113147 ATCTCCATGAAGTCGAATGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACC 113088 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 113087 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 113028 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || ||||| Sbjct 113027 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATA 112968 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 112967 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 112909 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 112908 TGCGAAGTC 112900 Score = 145 bits (160), Expect = 9e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 112612 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 112553 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 112552 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 112493 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 112492 AGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 112433 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 112432 TCATGTCGTTGCCTAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 112373 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 112372 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAACGGGTTCTC 112315 Score = 105 bits (116), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||||| || | || || ||||| || |||||||| Sbjct 112890 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 112831 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || | |||||||| || || || || |||||||| || |||||||| Sbjct 112830 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 112771 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||||| |||||||| |||| ||| | |||| ||||||| || ||||| Sbjct 112770 GCCGATCAGCCGCTCCTGAAAG--CTCGCGCTGCTCC----CGATCCACCGCACGGCCCA 112717 Query 869359 GTCGGCCTTTTTC 869371 || ||||| ||| Sbjct 112716 CTCCGCCTTCTTC 112704 >seq12 Length=572832 Score = 102 bits (112), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | ||||||||||||||| | Sbjct 173214 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTCGA 173273 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || ||| | ||||||| | |||||| | |||||| | || || || ||||| Sbjct 173274 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 173333 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | | | || |||||| |||||||| ||||| |||| Sbjct 173334 ACCATTCTCCGTTGCCATGACGCTGACCTTTCCGGAGCGGGTGA 173377 >seq67 Length=156592 Score = 100 bits (110), Expect = 3e-15 Identities = 150/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 41340 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 41281 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 732469 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 41280 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 41222 Query 732470 GTCGCTC-AACGCCGACCACGC-CATCGACACGGTGTCGCACGCCCTGTGCTACCCGCAG 732527 ||| ||| | | || || ||| ||||| | |||| ||| | ||||||||| Sbjct 41221 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCAA 41163 Query 732528 GTGCCGCTGGTGCAGACC---GCCATG 732551 |||||||||| ||| |||||| Sbjct 41162 AAACCGCTGGTGCGCACCAAGGCCATG 41136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107111626266512