Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-36 seq33 163 4e-34 seq72 154 2e-31 seq12 107 3e-17 seq67 100 5e-15 >seq2 Length=1084633 Score = 170 bits (188), Expect = 3e-36 Identities = 196/264 (74%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| || Sbjct 752879 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGA 752938 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||| || || || | |||| ||||| ||||| | |||||| || | ||| Sbjct 752939 CGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCC 752998 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||||||||||| ||| ||| | |||||||| ||||| || ||||||||||| || Sbjct 752999 AATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGGGTGTCGTAGATGCCGTC 753058 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| ||||| ||| ||| |||||||| ||||||| || ||||| Sbjct 753059 GATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 753118 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 ||| || ||||| || || || || Sbjct 753119 GGCGTTAAAGAGGGTCGGGGTGGC 753142 Score = 96.9 bits (106), Expect = 5e-14 Identities = 354/544 (65%), Gaps = 14/544 (3%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| ||||| |||| ||| |||| || || | | ||||||||| ||||| | ||| || Sbjct 751475 GTCCACGGTGAACTTGATCGCGTCCGCCGCGGCCTTGGTGCGCAGGTAGTAGACGCCAGT 751534 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGA- 2069371 ||| || ||| ||| | ||| | |||| |||||||| ||| | ||| Sbjct 751535 CTTCAGCCCGGCCTCCCAGGAATAGAAGAGCATGGACGTGATCTGGCCGGAGGTGGGGCT 751594 Query 2069372 CGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCA 2069431 | | | | ||||||| |||||||| |||||| | || | |||||||| |||| Sbjct 751595 CTGGAG-GAAGAGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGGTCGCGTGCCA 751653 Query 2069432 TGTCGATGGTCACGCGGT-TGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGC 2069490 | || || | ||| | |||| | ||||||||||||| | | || || | || | Sbjct 751654 TATCTATCAGCTTGCGCTGTGGA-ATCTCCCACACGGTCCGGTAAAGCTCCCTCAGGTCG 751712 Query 2069491 GGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCG 2069550 ||||| ||| | | ||| | | ||||| | | ||||| || Sbjct 751713 TCCGGCATGCCGT-----TAATAGCGAGG-ATAGAGCCATTGTAAGAGATGATCTCGTTT 751766 Query 2069551 CGAAAGTCGGG-CGT-CCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGA 2069608 || | ||| ||| ||| || || ||||| || | | | ||| |||| ||| | Sbjct 751767 CGCA--TCGACTCGTTCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCA 751824 Query 2069609 CCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGC 2069668 | || | || ||||| ||||| ||||| ||||||||| |||| | |||| Sbjct 751825 CAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGA 751884 Query 2069669 ACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCA 2069728 | |||| ||||||| || |||||||| || | || || |||||| | || || |||| Sbjct 751885 AGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCA 751944 Query 2069729 GCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGC 2069788 | |||||||||| ||| ||| |||| | || ||| | ||||||||||||| | Sbjct 751945 GGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGAC 752004 Query 2069789 CGCT 2069792 |||| Sbjct 752005 CGCT 752008 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| | || ||||| ||||| || || | Sbjct 752717 CACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTG 752776 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || || || || ||| |||||| || || | | || |||||||||||| || Sbjct 752777 GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGG 752836 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||||||||||||||||||||| ||||| || Sbjct 752837 CTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACC 752878 >seq33 Length=364854 Score = 163 bits (180), Expect = 4e-34 Identities = 242/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| || |||| Sbjct 190105 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCTTCCTCTCG 190161 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 190162 AAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAG 190221 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 190222 TGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 190281 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 190282 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 190341 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | ||| |||| || | | || ||| || | |||| Sbjct 190342 TCGCGCTCGATGTTCACCGCATCCACGATAATCT-CCAGCACGCGCTCGCGCGGCAGCTT 190400 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 190401 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 190439 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 190774 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 190833 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || || |||||||| ||||| ||||| ||||| | ||| Sbjct 190834 TCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 190893 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 190894 GTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 190953 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 190954 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 191013 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 191014 AACGGGTTCTCCTGCTGCAGCGGCTC 191039 Score = 107 bits (118), Expect = 3e-17 Identities = 218/324 (67%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||||| || || || ||||| || |||||||| Sbjct 190449 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 190508 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || | || ||||| || || || || |||||||| || |||||||| Sbjct 190509 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 190568 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||| |||||||| ||| | | || | | ||||||| || ||||| Sbjct 190569 GCCGATCAGCCGCTCCTGAAAGCTCGCGCTGCTCCC------GATCCACCGCACGGCCCA 190622 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| ||| | | || | ||| | || ||| | | || | |||||| Sbjct 190623 CTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAGCTTCTC 190682 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | |||| ||| ||| ||||| | || | ||||| ||||| ||||||||||| || Sbjct 190683 CTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTC 190742 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 190743 CATCATCAGCTGGAACCCGTAGAA 190766 >seq72 Length=122406 Score = 154 bits (170), Expect = 2e-31 Identities = 240/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | | |||| Sbjct 113234 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCG 113178 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| || ||||||| |||||| | ||| || | | || Sbjct 113177 AAGAAGTTCGTTTTGCCCTGCAGAGAGATCATCTCCATGAAGTCGAATGGCTGCGTCGAG 113118 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 113117 TGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 113058 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 113057 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 112998 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | ||| |||| || | | || ||| || | |||| Sbjct 112997 TCGCGCTCGATGTTCACCGCATCCACGATAATCT-CCAGCACGCGCTCGCGCGGCAGCTT 112939 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 112938 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 112900 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 112565 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 112506 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || || |||||||| ||||| ||||| ||||| | ||| Sbjct 112505 TCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 112446 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 112445 GTTGCCCAGTCCTTCATGTCGTTGCCTAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 112386 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 112385 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 112326 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 112325 AACGGGTTCTCCTGCTGCAGCGGCTC 112300 Score = 104 bits (114), Expect = 4e-16 Identities = 217/324 (67%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||||| || || || ||||| || |||||||| Sbjct 112890 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 112831 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || | || ||||| || || || || |||||||| || |||||||| Sbjct 112830 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 112771 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||| |||||||| ||| | | || | | ||||||| || ||||| Sbjct 112770 GCCGATCAGCCGCTCCTGAAAGCTCGCGCTGCTCCC------GATCCACCGCACGGCCCA 112717 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| ||| | | || | ||| | || ||| | | || | |||||| Sbjct 112716 CTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAGCTTCTC 112657 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | ||| ||| ||| ||||| | || | ||||| ||||| ||||||||||| || Sbjct 112656 CTCGCTGTCTGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTC 112597 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 112596 CATCATCAGCTGGAACCCGTAGAA 112573 >seq12 Length=572832 Score = 107 bits (118), Expect = 3e-17 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | ||||||||||||||| | Sbjct 173214 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTCGA 173273 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| ||| | ||||||| |||||| | |||||| | || || || ||||| Sbjct 173274 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 173333 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | | | || |||||| |||||||| ||||| |||| Sbjct 173334 ACCATTCTCCGTTGCCATGACGCTGACCTTTCCGGAGCGGGTGA 173377 >seq67 Length=156592 Score = 100 bits (110), Expect = 5e-15 Identities = 150/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||| | ||||||| Sbjct 41340 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 41281 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 41280 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 41222 Query 653014 GTCGCTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAG 653071 ||| ||| | | || || ||| |||||| | |||| ||||| ||||||||| Sbjct 41221 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCAA 41163 Query 653072 GTGCCGCTGGTGCAGAC---GGCCATG 653095 |||||||||| || ||||||| Sbjct 41162 AAACCGCTGGTGCGCACCAAGGCCATG 41136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916210658147504