Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq13 86.0 8e-12 seq16 82.4 1e-10 seq6 82.4 1e-10 seq4 82.4 1e-10 >seq2 Length=1084633 Score = 134 bits (148), Expect = 2e-26 Identities = 558/865 (65%), Gaps = 19/865 (2%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| | | |||||||| | | Sbjct 752388 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 752447 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || |||| ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 752448 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 752507 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || ||||||||||| ||| | ||| |||||||| |||| || | || || Sbjct 752508 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 752567 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || | | | | |||| || | ||| ||| || ||||| | |||||| Sbjct 752568 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 752623 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 111524 |||||| |||||||||||| ||| || ||| ||| || || | ||| Sbjct 752624 GCGCTCGTAGAGCCGCTCAAACTCCTCA-CCATAGCAATCGCTGAGGCCCGGGCACGTGT 752682 Query 111525 CTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| | || | ||| || || | | || || ||| |||| || || ||||| Sbjct 752683 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGG 752741 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||| | | ||||| || | || || || | || |||| || Sbjct 752742 ATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 752801 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | | || || | | || || |||||||| ||||| |||||||| || | | ||| Sbjct 752802 AGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCC 752861 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || ||| | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 752862 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 752921 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCAC 111819 || | | || | || || || || || || || | || | | Sbjct 752922 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT-GTAGCTGCCCGCCGCGCGGAT 752980 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAA 111878 | || | ||||| ||||| || || | || ||||| ||| ||| |||||| | | Sbjct 752981 GTTGTGCACGTGCAGGCCAATGCCGCC-GGCCGCTTTGCTGATCACCGCGCACTCCTTCA 753039 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 753040 GGGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 753099 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 753100 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 753159 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 ||||| |||||| ||||| || | | ||| | ||||| ||||||| | Sbjct 753160 TCGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAG 753219 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| ||||||||||| | |||||| Sbjct 753220 CGACACGCATGAACATCTGCTGTGG 753244 >seq13 Length=506622 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 232446 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 232387 Query 145344 GGTAGGA 145350 ||||||| Sbjct 232386 GGTAGGA 232380 >seq16 Length=526746 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 269984 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 269925 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 269924 CAGGTAGGAG 269915 >seq6 Length=876310 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 655945 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 656004 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 656005 CAGGTAGGAG 656014 >seq4 Length=1102922 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 622187 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 622128 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 622127 CAGGTAGGAG 622118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029362265600