Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 259 5e-64 >seq2 Length=1084633 Score = 259 bits (286), Expect = 5e-64 Identities = 522/756 (69%), Gaps = 20/756 (3%) Strand=Plus/Minus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 |||||||| ||||| | || || ||||| | || || | || |||||||||||| Sbjct 753232 TTCATGCGTGTCGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTGCGTGAGACGTAC 753173 Query 53252 GACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 ||| | ||| | || | | ||| || |||||||| || ||||| || ||||| || || Sbjct 753172 GACCTCATGT-CGAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTTAACGCCGGCAC 753114 Query 53311 GAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 | || || ||| |||| |||||||||||||| |||||| ||| ||||| Sbjct 753113 CCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGACAGCATCGA 753057 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||||||||||| || || |||||||| || ||| ||| | | || || || || Sbjct 753056 CGGCATCTACGACACCCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCCGGCGGCATTGG 752997 Query 53428 TATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | ||| ||| | ||| |||| ||| |||| || || ||||||||| || Sbjct 752996 CCTGCACGTGCAC-AACATCCGCGCGGCGGGCAGCTACATAGCTGGTACGAACGGCA-CG 752939 Query 53487 CCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 ||| || ||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 752938 TCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACGTGGACCAG 752879 Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 ||||| || ||||||||||| | || ||| |||| |||||||| |||||||||||| | Sbjct 752878 GGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACGCCGACGTC 752819 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | | ||||| |||| | || ||| | || || |||| ||| ||||| Sbjct 752818 TTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGCGACCTC 752759 Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG-GAGAAG-GACGAGGAGT 53723 || || |||||||| || || || || ||| | ||| || ||| || | | ||| Sbjct 752758 TTCTATGCGCTGTGGATCCCAGATCTGTTTATG--AGGCGTGTGAAAAGCGAGGGGAAGT 752701 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTA 53783 || |||||| || ||| |||||| |||||| | | ||| |||||||||||| Sbjct 752700 GGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAGGAGTTTG 752641 Query 53784 ACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCG 53841 | | | || || || |||| ||| | |||||||| | |||| | || |||| | Sbjct 752640 AGCGGCTCTA-CGAGCGCTACG-AGTCCGAGGGCCGCGGCGTCAAGACGATCCAGGCCCA 752583 Query 53842 TGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTA 53901 ||||| ||| ||| ||||| || ||| | |||||||| ||||| ||| ||| Sbjct 752582 GGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCATCCTCTA 752523 Query 53902 CAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 |||||| | |||| ||| ||||||||||| Sbjct 752522 CAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAA 752487 Score = 109 bits (120), Expect = 6e-19 Identities = 127/166 (77%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||| | |||||||||||||| || || || |||||||||||||| || | ||||| | Sbjct 751961 GGGCATGCGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCT 751902 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAG 55595 |||||||||||| |||||||| | ||| | ||||||||| | ||||| | | || Sbjct 751901 CGGCAACAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGTGTGCTGAG 751842 Query 55596 CAGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCT 55638 | || ||||| ||| || | |||||| ||||||||| |||||| Sbjct 751841 C-GGCGAGTTCCCTGT--TG-TGAACAAGTACCTCGTCATGGACCT 751800 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 153843 GAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACGCGTTG-TTCCT 153901 ||||||||| | || ||| || ||| | || ||||| ||||||||||| | ||| |||| Sbjct 181813 GAAAACGTTCGTCAGCTTCGCGCCGAAGCCGTTGCGCCCGCCCGTCAC-CTTTGCCTCCT 181871 Query 153902 CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGGGATCCAGA 153958 | |||| |||||||||| ||| | ||||||||| ||||| | ||| || | ||||| Sbjct 181872 CATCGTCGTAGTTGGAGGAGGTGAGAAGGTGCCCGAAGATCATTTCCGGCACCCAGA 181928 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 |||| |||||||||| |||||||||||||||||| | ||||| || ||| || Sbjct 751703 GGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGCAAGCTGATAGATATGGCACGCGA 751644 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA-ATCCTTCAC 55850 || || |||||| |||||||| ||||| |||||| ||||| | ||| || | | Sbjct 751643 CCGCGGCCAGTACATTGACCAGTCGCAGTCGCTGAACCTCTTCCTCCAGAGCCCCACCTC 751584 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGT 55910 |||| || | | || |||| ||| || ||| || || || ||||| || | | Sbjct 751583 CGGCC-AGATCACGTCCATGCTCTTCTATTCCTGGGAGGCCGGGCTGAAGACTGGCGTCT 751525 Query 55911 ACTATCTGCGGACC 55924 |||| ||||| ||| Sbjct 751524 ACTACCTGCGCACC 751511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213701692800