Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20turanica_20[genbank_20GCA_5F000441995.1_202013-07-29] 336 sequences; 32,320,007 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14 206 2e-48 seq12 206 2e-48 seq4 199 4e-46 >seq14 Length=517377 Score = 206 bits (228), Expect = 2e-48 Identities = 188/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| ||||||||| ||||||||| ||||| | Sbjct 230930 CATCAC-GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 230872 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| |||| Sbjct 230871 AGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 230812 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| || | || |||||||||| ||| || ||||| | | |||||||||| Sbjct 230811 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCG 230752 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 230751 GCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 230696 >seq12 Length=572832 Score = 206 bits (228), Expect = 2e-48 Identities = 188/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| ||||||||| ||||||||| ||||| | Sbjct 485373 CATCAC-GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 485315 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| |||| Sbjct 485314 AGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 485255 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| || | || |||||||||| ||| || ||||| | | |||||||||| Sbjct 485254 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCG 485195 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 485194 GCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 485139 >seq4 Length=1102922 Score = 199 bits (220), Expect = 4e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| || Sbjct 384280 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 384339 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||||| ||||||||||| ||||||| || Sbjct 384340 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 384399 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||||| |||||| Sbjct 384400 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 384459 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 384460 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 384507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302058323200