Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq24 127 4e-24 seq14 118 2e-21 seq48 96.9 7e-15 >seq24 Length=140537 Score = 127 bits (140), Expect = 4e-24 Identities = 164/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGT-CGCCTTATTGGCATGAACGCTGAACTTATGGG 230474 |||||||| || ||||| | || ||| || || || ||||||||||||||||| ||| Sbjct 339 GAGTTCATCTGCGACGCGCTGCC-TGTGCGGCTGATCGGCATGAACGCTGAACTGATGTC 397 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 ||||||||||| || || || ||||| | |||| | || || |||||| || Sbjct 398 GCAGTACATCGAGTTTGTGGCAGACCGGCTGCTTGTGTCGCTGGGGCTCGAGAAGCACTA 457 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 |||| | | || || | || |||||| | || ||||| ||||| ||||| ||||| Sbjct 458 CAACGTGGCGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGACGAACTT 517 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 |||||| ||| ||| |||| ||||||| | |||| ||||||| Sbjct 518 CTTCGAGAAGAAGGTCGGTGAGTATCAGAAGGCTGGCGTGATGA 561 >seq14 Length=160581 Score = 118 bits (130), Expect = 2e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGT-CGCCTTATTGGCATGAACGCTGAACTTATGGG 230474 |||||||| || ||||| | || ||| || | | ||||||||||| || || ||| Sbjct 143563 GAGTTCATCTGCGACGCGCTGCC-TGTGCGGTTGGTCGGCATGAACGCGGACCTGATGTC 143621 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 ||||||||||| || || || ||||| | |||| | || || |||||| || Sbjct 143622 GCAGTACATCGAGTTTGTGGCGGACCGGCTGCTTGTGTCGCTGGGGCTCGAGAAGCACTA 143681 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 |||| | | | || || | || |||||| | || ||||| ||||| ||||| ||||| Sbjct 143682 CAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGACGAACTT 143741 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 |||||| ||| ||| |||| ||||||| | |||||||||||| Sbjct 143742 CTTCGAGAAGAAGGTCGGTGAGTATCAGAAGGCTGGTGTGATGA 143785 >seq48 Length=107735 Score = 96.9 bits (106), Expect = 7e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 281731 GGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCG 281790 || |||| ||||| |||||||||| | |||||||| ||||| |||| | | || Sbjct 19033 GGCTCAGCTTCGTAAAGATATACCGCGGGGCGGCGTGGTCGTTACCGAGCTGCTGACGCG 19092 Query 281791 ACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTG-CTCCCGACGTAATCCTGA 281849 | || |||||||||||||||| | | ||| ||||| ||| |||||| | | | ||| Sbjct 19093 AGCCGAACTGACCCTCCGGCACGAGCAGGTTGATGTTGTTGCCTCCCG-TGAAGTTCTGT 19151 Query 281850 GCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGA 281894 |||| || || || ||| |||| ||||| ||||| ||||| ||| Sbjct 19152 GCCATCTTTACAATCGTCTCCTGCAGCGACACCTCGCCGTGATGA 19196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057807519102080