Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 385 5e-102 seq24 223 4e-53 >seq14 Length=160581 Score = 385 bits (426), Expect = 5e-102 Identities = 609/861 (71%), Gaps = 14/861 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||| ||| |||||| ||||| ||| | |||| | ||||| || ||||| || Sbjct 142867 GAACCGTTGCAGCGCGATAACCCGTTCCGCTACGTGCTGTTCCCGATCGTATACCACGAT 142926 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | |||||| Sbjct 142927 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTG 142986 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| || ||||||||| || |||||| |||||| || |||||||||||| Sbjct 142987 GGCAACGACATGAAGGACTGGGAGAAGTTAAACGACGGCGAGCGGCACTTCATCAAGCAC 143046 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || ||||| || | |||||||||||||||| |||||| || | |||| ||| Sbjct 143047 GTCCTTGCTTTTTTTGCAGGGAGCGACGGCATCGTCATCGAGAACCTCGCGCAGCGCTTC 143106 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 || ||| ||||| | |||||||| |||||||||||| ||| | |||||| Sbjct 143107 ATGACCGACGTGAAGGTGCCGGAGGCGCGCGCCTTCTACGGCTTCCAGTTGATGATGGAG 143166 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGA 116934 ||| | |||||||| | ||| ||| || | ||||||||| | || | | ||||| Sbjct 143167 AACATCCACTCGGAGACGTACTCGGTGCTGCTTGACACGTACATCACGGACAGC-GAGGA 143225 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||||| || || || |||| ||| ||||||| |||||||| | ||||||| ||||| Sbjct 143226 GAAGCTGCGGCTGCTGCACGCAATCCAGACGATCCCGTGCGTTCAGAAGAAGGCGGAGTG 143285 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||| |||| ||||| ||| || || |||| ||||| ||| | | |||||| Sbjct 143286 GGCTGTGCGTTGGAT---CGGGAGCCGCGCGAGCTTCCAGGAGCGGCTGATCGGCTTCGC 143342 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || |||||| | ||||| || || ||| ||| | || ||||| ||||| || Sbjct 143343 CGCGGTTGAGGGCATATTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCG 143402 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 ||| || |||||||| ||||| |||||||||||||||||||| | |||||||| ||||| Sbjct 143403 CGGGCTGATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGCA 143462 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCGC 117230 ||||| || || | || | | | ||| | ||| | | | | || | || Sbjct 143463 CACGGACTTCGCGTGCCTCCTCTACGACTCGCACATCAAGCA-CAAGCTGCCCCGTGAGC 143521 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCG 117289 |||| ||||||| || |||||||| ||| |||| ||| ||| || ||| ||| Sbjct 143522 GCGTTCTGGAGATCATCGTGGACGCGGTGAACATTGAGC-GCGAGTTCATCTGCGACGCG 143580 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348 ||||| ||||| || | || | || ||| | | ||||||||| ||||||||||| || Sbjct 143581 CTGCCTGTGCGGTTGGTCGGCATGAA-CGCGGACCTGATGTCGCAGTACATCGAGTTTGT 143639 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 || ||| ||||||| | ||||| || |||||||||||| | | | ||| | Sbjct 143640 GGCGGACCGGCTGCTTGTGTCGCTGGGGCTCGAGAAGCACTACAACGTGACGCAGCCGTT 143699 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||| ||| | | ||||| Sbjct 143700 CGACTTCATGGAGATGATCTC 143720 >seq24 Length=140537 Score = 223 bits (246), Expect = 4e-53 Identities = 354/501 (71%), Gaps = 10/501 (2%) Strand=Plus/Plus Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| || || || |||| ||| ||||||| |||||| || | ||||||| |||| Sbjct 1 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAGT 60 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||| | || ||||||| |||| | || |||| ||||| ||| | | ||||| Sbjct 61 GGGCTGTACGTTGGATCG---GCAGCGGCGCTAGCTTCCAGGAGCGGCTGATCGGCTTCG 117 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | || || |||||| | ||||||||||| ||| ||| | || ||||| ||||| | Sbjct 118 CTGCGGTAGAGGGCATATTCTTTTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGC 177 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 |||| || |||||||| ||||| |||||||||||||||||||| | |||||||| |||| Sbjct 178 GCGGGCTGATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGC 237 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCG 117229 | |||||||| || |||| | | | ||| | ||| | | | | || | | Sbjct 238 ACACGGACTTTGCGTGCCTGCTCTACGACTCGCACATCAAGCA-CAAGCTGCCCCGTGAG 296 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGC 117288 ||||| ||||||| || || || || ||| |||| ||| ||| || ||| || Sbjct 297 CGCGTTCTGGAGATCATCGTGGATGCAGTGAACATTGAGC-GCGAGTTCATCTGCGACGC 355 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGT 117348 |||||| ||||| ||| | || | || ||| ||||||||| ||||||||||| || Sbjct 356 GCTGCCTGTGCGGCTGATCGGCATGAACGCTGAACTGATGTCGCAGTACATCGAGTTTGT 415 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 || ||| ||||||| | ||||| || |||||||||||| | | | ||| | Sbjct 416 GGCAGACCGGCTGCTTGTGTCGCTGGGGCTCGAGAAGCACTACAACGTGGCGCAGCCGTT 475 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||| ||| | | ||||| Sbjct 476 CGACTTCATGGAGATGATCTC 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211368668160