Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq31 86.0 5e-12 >seq31 Length=128647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 134125 TCTTTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAGCATTAAATCGCGAGCTT 134184 |||| || || |||||||| || ||||| | ||||||| || | | ||| || || Sbjct 107708 TCTTCACACGCTTCATGAACAGGTCGGGGACCCACAGGGCGTAGAACAGATCACGCGCAC 107649 Query 134185 TAGTGTCTTCGGAGCCCATGTTGCGTCTCAAGTTGAGAAACTCATAAATTTCCGGATGCC 134244 ||| || ||| ||||||| ||| | ||||| || | || || | |||| Sbjct 107648 GCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGGAGCAGAAAACCAAAGATGTCGGCGTGCC 107589 Query 134245 ACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGCTTAC---CACCCTGGTCGACGTGAC 134301 ||||||| | ||| |||||| ||||| || ||||||| |||||||||| |||| | Sbjct 107588 ACGGCTCCAGGTACACGGCGAAAGCACCCTTGCGCTTACCACCACCCTGGTCCACGTAGC 107529 Query 134302 GCACCATGTTGTTGAAGACTCTCAACAT 134329 | | |||||||||| || | || ||| Sbjct 107528 GGGCGGTGTTGTTGAACACACGCAGCAT 107501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 133212 ACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTC 133271 |||||||||| ||||||||| | ||||||||| || || || | | || | || Sbjct 108612 ACGAGATACTTGTTGACCACCGGGAACTCGCCGCTCAGCACACGGCGCACGTAGATGTTG 108553 Query 133272 GACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGC 133331 |||||||| || ||||| | |||||||||||||| ||||||| || | ||| || ||| Sbjct 108552 GACGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCTGTCGGC 108493 Query 133332 AT 133333 || Sbjct 108492 AT 108491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823970633472