Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq31 141 2e-28 seq14 118 2e-21 seq24 100 6e-16 >seq31 Length=128647 Score = 141 bits (156), Expect = 2e-28 Identities = 565/869 (65%), Gaps = 34/869 (4%) Strand=Plus/Plus Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACA--AGGAT 248934 ||||||||| || ||||| |||| |||| || ||| |||| || ||| ||| Sbjct 107164 GATCGTGGAGCGGCCGCAGCAGTTGTTCCTGCGTGTCGCTCTCGGCATCCACCTCAGG-- 107221 Query 248935 GACATAGAGAGCGTGCTCGAGACGTACACCGGAATGA-GT-GAACGC-TGGATGACACAT 248991 || | ||| ||||| |||||||||| | | ||| || ||| | | | || || Sbjct 107222 GATTTGAAGAACGTGCGCGAGACGTAC---GAATTGATGTCGAAGGGATTCTTCACGCAC 107278 Query 248992 GCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTT 249051 ||||| || || |||||||||||||| || || ||| ||||||||||||| | Sbjct 107279 GCCACGCCAACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCTTG 107338 Query 249052 CTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAG 249111 | |||||| | |||||| ||||||||||||| ||||| || || || || Sbjct 107339 GTGGCCATGAAGGACGACAGCATCGACGGCATTTACGACACCCTGAAGGAGTGTGCCGTC 107398 Query 249112 ATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCG 249171 || ||| |||||||| || || || ||| ||| ||||| || || Sbjct 107399 ATCAGCAAAGCGGCGGGCGGCATTGGCCTGCACGTGCACAATATCCGCGCTGCTGGAAGC 107458 Query 249172 TACATCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTG 249229 ||||| || || || || ||| | || | ||||| | || || || Sbjct 107459 TACATTGCCGGCACGAACGGCACGTCGA--ACGGATTGGTACCGATGCTGCGTGTGTTCA 107516 Query 249230 AGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGT 249286 | ||||||| | | | | |||||| || | || ||||| | |||||| ||| Sbjct 107517 ACAACACCGCCCGCTACGTGGACCAGGGTGGTGGTAAGCGCAAGGGTGCTTTCGCCGTGT 107576 Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346 | |||| |||||||||||| || || | || ||| | |||| |||| ||||| Sbjct 107577 ACCTGGAGCCGTGGCACGCCGACATCTTTGGTTTTCTGCTCCTGAAGCGCAACACCGGCA 107636 Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406 | || | | | |||||||| || ||||||| |||||||||| ||||| |||||||| Sbjct 107637 AGGACGACCAGCGTGCGCGTGATCTGTTCTACGCCCTGTGGGTCCCCGACCTGTTCATGA 107696 Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466 || || ||| ||| || | |||||||| | ||| || | |||| | | | Sbjct 107697 AGCGTGTGAAGAGCGAAGGGAAGTGGACGCTGATGGACCCGAACGCCTGTCCGGGCTTGA 107756 Query 249467 TCGATCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCA 249523 || || | |||||| || ||||| | ||||||| || ||||| | | ||| Sbjct 107757 GTGA-CTGCTACGGCGAGGAGTTCGAGC--GCCTATATGAGCGCTACGAGGCGGAGGGCC 107813 Query 249524 TCGGC---AAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGA 249577 ||| |||| || |||| | ||| | || || | | | ||||| |||| Sbjct 107814 GTGGCGTGCAGACTATTCAGGCGCAGGAGGTGTGGTTCGCTA---TCCTCGAGTCGCAGA 107870 Query 249578 TAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAA 249636 | ||||| || | ||||| | || ||| ||| ||||||||||||| |||| ||||| Sbjct 107871 TTGAGACGGGCGTGCCGT-TCATCCTGTACAAGGACGCGTGCAACGGCAAGTCGAACCAG 107929 Query 249637 CGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCC 249696 | | || || |||||| | || || || ||| | ||| | || | ||| | || Sbjct 107930 AAGAACCTCGGCACCATCAAGTGCTCGAACCTGTGTACGGAGATAGTTGAGTACACCTCG 107989 Query 249697 AAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||||||| ||||| |||||||| || Sbjct 107990 CCGGAGGAGACCGCCGTGTGCAACCTTGC 108018 >seq14 Length=160581 Score = 118 bits (130), Expect = 2e-21 Identities = 387/584 (66%), Gaps = 32/584 (5%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||| ||||| || || || || ||||| ||||| | ||||| || | Sbjct 143750 TTCTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCT-- 143693 Query 157334 GCG-CA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG-TCCGCCACAAAC 157390 ||| || |||||| ||| ||| ||||||| | || ||| | |||||||||||| Sbjct 143692 GCGTCACGTTGTAGTGCTTCTCGAGCCCCAGC-GACACAAGCAGCCGGTCCGCCACAAAC 143634 Query 157391 TTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGCCGAC 157450 | |||||||| | ||| | | || | || |||| | | || || ||||| | | Sbjct 143633 TCGATGTACTGCGACATCAGGTCCGCGTTCATGCCGACCAACCGCACAGGCAGCGC-GTC 143575 Query 157451 GAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATGAACTCTCTCCCG 157509 | | ||||| |||| ||||| | | || |||| | || || || |||| | ||| || Sbjct 143574 GCAGATGAACTCGCGCTCAATGTTCACCGCGTCCACGATGATCTCCAGAACGCGCTCACG 143515 Query 157510 CGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG-CCGTGGCGTGAAG 157563 |||||| | | ||||| ||| | ||||| ||| ||| |||| ||||| || || Sbjct 143514 GGGCAGCTTGTGCTTGATGTGCGAGTCGTAGAGGAGGCACGCGAAGTCCGTG---TGCAG 143458 Query 157564 TCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTTCTGCC---G 157620 || ||||| | | |||||| ||| ||| | || || | | || ||| | Sbjct 143457 GCCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCC---GGGCATCAGCCCGCG 143401 Query 157621 CTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAGACAGGT 157680 ||||||||||||| | | |||||||||||||| ||| | |||||| | || Sbjct 143400 CTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAATATGCCCTCAACCGCGGC 143341 Query 157681 GAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGTTTCGGGGTTC---ATCCACTTCTCTGC 157737 |||||||| |||| |||| ||||| | || || || ||||| | | || Sbjct 143340 GAAGCCGATCAGCCGCTCC----TGGAAGC--TCGCGCGGCTCCCGATCCAACGCACAGC 143287 Query 157738 CCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGATAGATCGCATGACGTGTCTCTG 157797 ||| ||||||||| | | | || ||||||||||| | ||| | | || Sbjct 143286 CCACTCCGCCTTCTTCTGAACGCACGGGATCGTCTGGATTGCGTGCAGCAGCCGCAGCTT 143227 Query 157798 CTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAGAGAGTACG 157841 ||| || ||||| ||| ||| || | || |||| ||||||| Sbjct 143226 CTCCTCGCTGTCCGTGATGTACGTGTCAAGCAGCACCGAGTACG 143183 >seq24 Length=140537 Score = 100 bits (110), Expect = 6e-16 Identities = 265/392 (68%), Gaps = 21/392 (5%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||| ||||| || || || || ||||| ||||| | ||||| || | Sbjct 526 TTCTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGC 467 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG-TCCGCCACAAACTT 157392 || |||||| ||| ||| ||||||| | || ||| | || |||||||||| Sbjct 466 GCCACGTTGTAGTGCTTCTCGAGCCCCAGC-GACACAAGCAGCCGGTCTGCCACAAACTC 408 Query 157393 GATGTACTCTGTCATGCTCTTCT-CGCTGATACCGATGAGCGCGACGGGAAGCGCCGACG 157451 |||||||| | ||| | ||| || | || ||||| ||| || || ||||| | || Sbjct 407 GATGTACTGCGACAT-CAGTTCAGCGTTCATGCCGATCAGCCGCACAGGCAGCGC-GTCG 350 Query 157452 AA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATGAACTCTCTCCCGC 157510 | ||||| |||| ||||| | | || || | | || || || |||| | ||| || Sbjct 349 CAGATGAACTCGCGCTCAATGTTCACTGCATCCACGATGATCTCCAGAACGCGCTCACGG 290 Query 157511 GGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACGGAAG--CCGTGGCGTGAAGT 157564 |||||| | | ||||| ||| | ||||| || ||| || ||||| || || Sbjct 289 GGCAGCTTGTGCTTGATGTGCGAGTCGTAGAGCAGGCACGCAAAGTCCGTG---TGCAGG 233 Query 157565 CCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTTCTGCC---GC 157621 || ||||| | | |||||| ||| ||| | || || | | || ||| || Sbjct 232 CCCTCGTCACGCGAGATGAGCTCGTTGCTGAAGGTCAGCCC---GGGCATCAGCCCGCGC 176 Query 157622 TTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 |||||||||||| | | |||||||||||||| Sbjct 175 TTCTTCAGCCAGAACAGCGCGCAGAACGACCC 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073749670719488