Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptomonas_20seymouri_20[genbank_20GCA_5F001299535.1_202015-09-25] 1,216 sequences; 27,764,161 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq31 284 1e-71 seq14 201 1e-46 seq24 183 3e-41 >seq31 Length=128647 Score = 284 bits (314), Expect = 1e-71 Identities = 544/793 (69%), Gaps = 8/793 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| |||||||| ||||| ||||| ||| || || |||||||| || || || Sbjct 108027 GCGATGGAGGCAAGGTTGCACACGGCGGTCTCCTCCGGCGAGGTGTACTCAACTATCTCC 107968 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 ||||| || || ||||| || ||||| | || ||||||| || | |||||| Sbjct 107967 GTACACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCCGTTGCAC 107908 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||||| || ||| ||||| ||||||||| | ||||||||||| ||| || | Sbjct 107907 GCGTCCTTGTACAGGATGAACGGCACGCCCGTCTCAATCTGCGACTCGAGGATAGCGAAC 107848 Query 23201 CACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || |||| | ||| ||||| | ||| || ||||||| | || Sbjct 107847 CACACCTCCTGCGCCTGAATA-GTCTGCACGCCACGGCCCTCCGCCTCGTAGCGCTCATA 107789 Query 23260 CAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 | ||| || || || | ||||| ||||| || ||| || | |||| || Sbjct 107788 TAG-GCGCTCGAACTCCTCGCCGTAGCAGTCACTCAAGCCCGGACAGGCGTTCGGGTCCA 107730 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| | || | | || || |||| || || || || | ||| || | Sbjct 107729 TCAGCGTCCACTTCCCTTCGCTCTTCACACGCTTCATGAACAGGTCGGGGACCCACAGGG 107670 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 |||||||||| || || || ||| || || ||||||||||| |||| || || Sbjct 107669 CGTAGAACAGATCACGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGGAGCAGAA 107610 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 | | || | ||| || ||||||||||| ||||| ||||| || || ||| | |||| Sbjct 107609 AACCAAAGATGTCGGCGTGCCACGGCTCCAGGTACACGGCGAAAGCACCCTTGCGCTTAC 107550 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 || ||||| || ||||| ||||| ||||||||| |||| | |||||||| || | | Sbjct 107549 CACCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAACACACGCAGCATCGGTACCAATC 107490 Query 23559 CGTTGGACGCGCCGCCTACG-CCCGCCACACTCG-AACCTTTTGCTCGAACGTTGTGAAC 23616 |||| |||| |||| | || ||| || | | || || || | ||||| || Sbjct 107489 CGTTCGACGTGCCG--TTCGTGCCGGCAATGTAGCTTCCAGCAGCGCGGATATTGTGCAC 107432 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | || ||||| || ||| ||| || | || || | ||||| |||||||| Sbjct 107431 GTGCAGGCCAATGCCGCCCGCCGCTTTGCTGATGACGGCACACTCCTTCAGGGTGTCGTA 107372 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 ||||| ||||||||||| || || | || |||||||| ||||| ||| |||| || Sbjct 107371 AATGCCGTCGATGCTGTCGTCCTTCATGGCCACCAAGAAGCACGAGCTCATCTGCGGCTT 107312 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 ||||| |||| ||| || || || |||||||||| ||| |||| |||||||| | Sbjct 107311 CGGCGTGCCGGCGTTGAAGAGGGTTGGCGTGGCGTGCGTGAAGAATCCCTTCGACATCAA 107252 Query 23797 ATTGTACGTGTCG 23809 | |||||| ||| Sbjct 107251 TTCGTACGTCTCG 107239 Score = 125 bits (138), Expect = 6e-24 Identities = 501/782 (64%), Gaps = 19/782 (2%) Strand=Plus/Minus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 |||||| || |||| || || | || |||| || ||||| || || |||| || || Sbjct 108946 GTCCACCGTGAACTTGATCGCATCGGCAGCCGCCTTCGTGCGCAGGTAGTACACACCGGT 108887 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||| || || || ||| | ||| ||| | |||||||| | | ||| | | || Sbjct 108886 CTTGAGGCCACACTCCCAGGTGTAGAAAAGCATCGACGTGATCTGGCCAGAGGTGGGGTT 108827 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 | || | ||| || | |||||| || || || || || || ||| |||||| Sbjct 108826 CTGCAGGAACAGGTTCAGCGACTGCGATTGGTCAATGTACTGACCGCGGTCGCGGGCCAT 108767 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAA 22347 | |||| | ||| | || ||||| ||||| ||| || | | | | ||| Sbjct 108766 GTCGATCAGCTTGCGCTGAGGGATCTCCCACACGGTGCGGTAGAGCTCCTTAAGGTCTTG 108707 Query 22348 CGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTA-TGATCAAATTTTTAATCG 22406 || || ||||| | || |||||||| | | ||| | || ||| |||| Sbjct 108706 GGGGATGCCGTCGATAGACAAGATAGACCCGTT-TAGGGTAATAATTTCATTGCGCATCG 108648 Query 22407 TATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAA 22466 | |||||||||| ||| | | | || | || |||| ||| ||||| | | Sbjct 108647 TCTCGTTCCACAGTCCGCGCTTGATGAGGTCCATCACGAGATACTTGTTGACCACCGGGA 108588 Query 22467 ACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCAT 22526 |||||||| || || ||||| ||| |||||||| ||||| || ||||| | || | Sbjct 108587 ACTCGCCGCTCAGCACACGGCGCACGTAGATGTTGGACGTGAAGGGCTCGAAGCACTCGT 108528 Query 22527 TGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTC 22586 |||| || || ||||| | ||| || || ||||||||||| |||| ||| || ||||| | Sbjct 108527 TGTTGCCGAGAATCTGCGAGGTGGACGCTGTCGGCATCGGGGCCAGCAGAAGGGAGTTGC 108468 Query 22587 TCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTC-------CCACAGATCG 22639 || ||| || | || |||||| | |||||| |||| | ||| Sbjct 108467 GCATACCGGTCTGCATCACCTTCTCCTTGAGGCTGTCCCAGTCCCAGCGGCCACTGTTCG 108408 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 | ||| | || | |||||| ||| | |||| | ||| | || ||||||||||| Sbjct 108407 GGCGGGG----GTTCTTCCACATGTCGAACTGCAGAATGCCCTGGCTGGCCGGGCTGCCC 108352 Query 22700 TCGTACGTTTCGTACG-GACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 | | | || ||||||| | || | || || | | || | ||||||| |||| | Sbjct 108351 TTGAAGGTCTCGTACGCGCCCTCCTCCTTCGCCATCTCCATAGAT-GCCTCCACCGCGGC 108293 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG--GCGACGCTTTCGTAC 22816 | || || ||||| ||||| | | |||| | || ||| || |||| | | Sbjct 108292 AAAGTAGATCGTCTCAAAGATCTCCGCATTCA--CCCGCTGCGCCTCGGCGCTCACAAAA 108235 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 |||| ||||| || | ||||||||| |||| ||||| || || | || || || ||| Sbjct 108234 GGCAGACGCAGCAGAATGAACGCGTCTGCCAGGCCCTGCACACCGAGGCCAATGGGGCGG 108175 Query 22877 TT 22878 || Sbjct 108174 TT 108173 >seq14 Length=160581 Score = 201 bits (222), Expect = 1e-46 Identities = 459/682 (67%), Gaps = 14/682 (2%) Strand=Plus/Plus Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || ||| | ||| |||||||| | ||| ||||| || || || || || ||| | Sbjct 143113 GACGTGAAGGTGCCGGAGGCGCGCGCCTTCTACGGCTTCCAGTTGATGATGGAGAACATC 143172 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGT 57875 || || || | ||| ||| | || | || |||||| | | ||||| ||| ||||| | Sbjct 143173 CACTCGGAGACGTACTCGGTGCTGCTTGACACGTACATCACGGACAGCGAGGAGAAGCTG 143232 Query 57876 AGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 | ||| | |||| ||| | || || || ||| || |||||||| |||||| | | Sbjct 143233 CGGCTGCTGCACGCAATCCAGACGATCCCGTGCGTTCAG-AAGAAGGCGGAGTGGGCTGT 143291 Query 57935 CAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 ||||| ||| | || | ||| ||| |||| |||| |||||||| || Sbjct 143292 GCGTTGGATCGGGAGCCGCGCGAGC---TTCCAGGAGCGGCTGATCGGCTTCGCCGCGGT 143348 Query 57995 CGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053 || || |||||||| || ||| | | |||| | | || ||| ||||||| ||||| | Sbjct 143349 TGAGGGCATATTCTTCTCCGGGTCGTTCTGCG-CGCTGTTCTGGCTGAAGAAGCGCGGGC 143407 Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113 |||||||||| ||||| || ||||||||| | || ||||| |||||||| || || || | Sbjct 143408 TGATGCCCGGGCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACGG 143467 Query 58114 ATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCT 58170 | || |||||||| | | |||| ||||| | || | | | || || ||| | Sbjct 143468 ACTTCGCGTGCCTCCTCTACGACTCGCACATCAAGCACAAGCTGCCCCGTGAGCGCGTTC 143527 Query 58171 TGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGG 58230 |||| || ||| || ||||| || || ||||| || ||| || || || | Sbjct 143528 TGGAGATCATCGTGGACGCGGTGAACATTGAGCGCGAGTTCATCTGCGACGCGCTGCCTG 143587 Query 58231 TGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACA 58290 || || |||| |||||| || ||||||| ||||||| |||||||| || ||| Sbjct 143588 TGCGGTTGGTCGGCATGAACGCGGACCTGATGTCGCAGTACATCGAGTTTGTGGCGGACC 143647 Query 58291 GACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTT 58348 | || || ||| ||| ||| || |||||| || | ||||| || || Sbjct 143648 GGCTGCTTGTGTCG--CTGGGGCTCGAGAAGCACTACAACGTGACGCAGCCGTTCGACTT 143705 Query 58349 TATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATA 58408 ||| | |||||||||| | |||||||| ||||| ||||| || || || | || || Sbjct 143706 CATGGAGATGATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGTGAGTA 143765 Query 58409 TCAAAAATACGGCGTGATGAGC 58430 ||| || || ||||||||| Sbjct 143766 TCAGAAGGCTGGTGTGATGAGC 143787 >seq24 Length=140537 Score = 183 bits (202), Expect = 3e-41 Identities = 377/552 (68%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 57886 ACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 |||||||| | || || |||| | ||| |||||||| |||||| | | ||||| Sbjct 19 ACGCGATCCAGACGAT-CCCGTGCATCCAGAAGAAGGCGGAGTGGGCTGTACGTTGGATC 77 Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 |||| | || | ||| ||| |||| |||| ||||| || || || || ||| Sbjct 78 GGCAGCGGC---GCTAGCTTCCAGGAGCGGCTGATCGGCTTCGCTGCGGTAGAGGGCATA 134 Query 58005 TTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 ||||||||||| || |||| | | || ||| ||||||| ||||| ||||||||||| Sbjct 135 TTCTTTTCGGGGTCGTTCTGCG-CGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGG 193 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 ||||| || ||||||||| | || ||||| |||||||| || || || || |||||||| Sbjct 194 GCTGACCTTCAGCAACGAGCTCATCTCGCGTGACGAGGGCCTGCACACGGACTTTGCGTG 253 Query 58124 CCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 ||| | | |||| ||||| | || | | | || || ||| | |||| || || Sbjct 254 CCTGCTCTACGACTCGCACATCAAGCACAAGCTGCCCCGTGAGCGCGTTCTGGAGATCAT 313 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 | || || || || || ||||| || ||| || || || ||| || | Sbjct 314 CGTGGATGCAGTGAACATTGAGCGCGAGTTCATCTGCGACGCGCTGCCTGTGCGGCTGAT 373 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT--TTTG 58298 ||| |||||| ||| ||||||| ||||||| |||||||| || ||| | || || Sbjct 374 CGGCATGAACGCTGAACTGATGTCGCAGTACATCGAGTTTGTGGCAGACCGGCTGCTTGT 433 Query 58299 CTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358 ||| ||| ||| || |||||| | | ||||| || || ||| | || Sbjct 434 GTCG--CTGGGGCTCGAGAAGCACTACAACGTGGCGCAGCCGTTCGACTTCATGGAGATG 491 Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATAC 58418 |||||||| | |||||||| ||||| ||||| || || || | || ||||| || Sbjct 492 ATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGTGAGTATCAGAAGGCT 551 Query 58419 GGCGTGATGAGC 58430 |||||||||||| Sbjct 552 GGCGTGATGAGC 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759624350720